POPTR_0018s07040 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0018s07040 T278523_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.749 0.787
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.731 0.787
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.731 0.787
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.720 0.702
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.720 0.702
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.720 0.702
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.720 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s07040.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.887
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.887
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.887
Pm027209 Prunus mume Pm027209 I 0.879
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.879
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.859
PK00568.1 Cannabis sativa PK00568.1 I 0.856
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.848
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.846
MDP0000265359 Malus domestica MDP0000265359 I 0.845
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.842
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.833
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.833
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.833
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.828
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.828
29912.m005376 Ricinus communis 29912.m005376 I 0.825
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.795
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.771
Bo1g081300 Brassica oleracea Bo1g081300 I 0.763
Bra029978 Brassica rapa Bra029978 I 0.763
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.752
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.749
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.749
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.749
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.749
OBART01G28260 Oryza barthii OBART01G28260 I 0.749
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.749
OB01G37330 Oryza brachyantha OB01G37330 I 0.749
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.749
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.749
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.749
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.749
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.749
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.749
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.749
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.749
OS01G0708000 Oryza sativa OS01G0708000 D 0.749
Bra016037 Brassica rapa Bra016037 I 0.737
Bo6g116150 Brassica oleracea Bo6g116150 I 0.737
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.731
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.731
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.731
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.731
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.731
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.731
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.731
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.731
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.729
TCM_000807 Theobroma cacao TCM_000807 I 0.729
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.729
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.729
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.729
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.729
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.729
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.729
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.729
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.729
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.729
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.729
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.729
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.729
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.724
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.723
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.723
TRB2 Arabidopsis thaliana AT5G67580 D 0.720
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.720
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.720
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.720
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.718
29661.m000926 Ricinus communis 29661.m000926 I 0.718
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.718
Si002467m.g Setaria italica Si002467m.g I 0.715
Bo3g184590 Brassica oleracea Bo3g184590 I 0.713
Bra030894 Brassica rapa Bra030894 I 0.713
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.712
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.712
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.711
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.711
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.711
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.711
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.709
Bo8g067280 Brassica oleracea Bo8g067280 I 0.709
Bo8g104830 Brassica oleracea Bo8g104830 I 0.709
Bra016598 Brassica rapa Bra016598 I 0.709
mgf011386m Mimulus guttatus mgf011386m I 0.706
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.702
Ca_10058 Cicer arietinum Ca_10058 I 0.702
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.702
Bra030992 Brassica rapa Bra030992 I 0.701
mgf010975m Mimulus guttatus mgf010975m I 0.696
mgf000125m Mimulus guttatus mgf000125m I 0.696
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.695
OB01G30760 Oryza brachyantha OB01G30760 I 0.695
OS01G0589300 Oryza sativa OS01G0589300 I 0.695
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.695
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.695
OBART01G21150 Oryza barthii OBART01G21150 I 0.695
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.695
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.695
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.695
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.695
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.695
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.695
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.694
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.694
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.692
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.691
Bo5g023860 Brassica oleracea Bo5g023860 I 0.691
Bra025967 Brassica rapa Bra025967 I 0.691
TRB3 Arabidopsis thaliana AT3G49850 I 0.690
Bra037839 Brassica rapa Bra037839 I 0.690
Bo9g019040 Brassica oleracea Bo9g019040 I 0.690
Bra024438 Brassica rapa Bra024438 I 0.690
Bra037837 Brassica rapa Bra037837 I 0.690
Bo3g096520 Brassica oleracea Bo3g096520 I 0.690
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.689
mgf007122m Mimulus guttatus mgf007122m I 0.686
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.686
MDP0000234807 Malus domestica MDP0000234807 I 0.681
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.680
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.678
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.678
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.678
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.678
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.678
Cla012798 Citrullus lanatus Cla012798 I 0.678
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.678
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.677
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.674
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.674
Bostr.7128s0053 Boechera stricta Bostr.7128s0053 I 0.674
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.674
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.674
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.673
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.670
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.670
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.670
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.670
Cla006547 Citrullus lanatus Cla006547 I 0.670
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.670
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.670
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.670
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.670
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.669
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.669
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.663
Ca_08043 Cicer arietinum Ca_08043 I 0.663
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.663
TCM_029078 Theobroma cacao TCM_029078 I 0.662
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.662
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.662
29706.m001328 Ricinus communis 29706.m001328 I 0.662