CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra016598
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra016598
T267891_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.842
0.936
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.842
0.936
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.826
0.787
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.750
0.723
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra016598.1-P
Myb
5
57
KLKWTEEEEEALLAGVRKHGPGKWKNILRDPEFAGQLSNRSNIDLKDKWRNLS
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
157 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.909
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.899
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.880
Bra025967
Brassica rapa
Bra025967
I
0.880
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.875
Bra030992
Brassica rapa
Bra030992
I
0.870
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.863
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.863
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.842
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.842
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.842
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.842
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.835
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.835
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.834
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.827
Bra016037
Brassica rapa
Bra016037
I
0.827
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.827
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.826
OB01G37330
Oryza brachyantha
OB01G37330
I
0.826
OBART01G28260
Oryza barthii
OBART01G28260
I
0.826
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.826
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.826
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.826
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.826
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.826
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.826
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.826
OS01G0708000
Oryza sativa
OS01G0708000
D
0.826
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.826
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.824
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.824
TCM_029078
Theobroma cacao
TCM_029078
I
0.816
29706.m001328
Ricinus communis
29706.m001328
I
0.816
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.816
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.814
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.806
Pm013309
Prunus mume
Pm013309
I
0.806
Cla012798
Citrullus lanatus
Cla012798
I
0.798
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.798
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.792
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.792
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.771
Bra030894
Brassica rapa
Bra030894
I
0.771
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.767
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.764
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.756
TRB1
Arabidopsis thaliana
AT1G49950
D
0.750
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.750
Bra018818
Brassica rapa
Bra018818
I
0.750
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.750
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.750
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.750
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.750
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.750
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.750
PK00568.1
Cannabis sativa
PK00568.1
I
0.742
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.740
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.740
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.738
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.737
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.737
Si002467m.g
Setaria italica
Si002467m.g
I
0.737
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.737
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.737
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.737
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.736
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.736
Cagra.1262s0035
Capsella grandiflora
Cagra.1262s0035
I
0.735
Carubv10009763m.g
Capsella rubella
Carubv10009763m.g
I
0.735
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.731
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.731
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.731
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.731
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.731
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.731
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.730
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.730
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.728
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.728
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.723
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.723
Pm027209
Prunus mume
Pm027209
I
0.723
29912.m005376
Ricinus communis
29912.m005376
I
0.723
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.723
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.723
MDP0000265359
Malus domestica
MDP0000265359
I
0.723
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.722
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.722
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.722
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.719
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.719
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.719
BRADI2G42240
Brachypodium distachyon
BRADI2G42240
I
0.715
Si002403m.g
Setaria italica
Si002403m.g
I
0.715
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.715
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.715
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.715
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.710
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.710
Bra039650
Brassica rapa
Bra039650
I
0.710
mgf009594m
Mimulus guttatus
mgf009594m
I
0.710
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.709
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.709
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.709
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.709
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.709
TCM_042744
Theobroma cacao
TCM_042744
I
0.708
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.705
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.705
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.705
Traes_3AL_CF481F6AC
Triticum aestivum
Traes_3AL_CF481F6AC
I
0.705
TRAES3BF118300070CFD_g
Triticum aestivum
TRAES3BF118300070CFD_g
I
0.705
TRIUR3_08672
Triticum urartu
TRIUR3_08672
I
0.705
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.705
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.701
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.701
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.701
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.700
EuGene.1300010252
Ostreococcus RCC809
EuGene.1300010252
I
0.698
mgf007122m
Mimulus guttatus
mgf007122m
I
0.698
Ca_02722
Cicer arietinum
Ca_02722
I
0.690
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.690
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.690
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.690
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.688
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.688
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.688
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.688
Ca_08043
Cicer arietinum
Ca_08043
I
0.688
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.688
MTR_8g018410
Medicago truncatula
MTR_8g018410
I
0.683
mgf011386m
Mimulus guttatus
mgf011386m
I
0.682
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.680
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.679
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.679
Solyc01g106940.2
Solanum lycopersicum
Solyc01g106940.2
I
0.679
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.678
MDP0000234807
Malus domestica
MDP0000234807
I
0.678
Ca_10058
Cicer arietinum
Ca_10058
I
0.672
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.667
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.667
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.665
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.665
OB01G30760
Oryza brachyantha
OB01G30760
I
0.665
OBART01G21150
Oryza barthii
OBART01G21150
I
0.665
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.665
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.665
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.665
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.665
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.665
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.665
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.665
OS01G0589300
Oryza sativa
OS01G0589300
I
0.665
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.664
TCM_037620
Theobroma cacao
TCM_037620
I
0.662
Gorai.001G013000
Gossypium raimondii
Gorai.001G013000
I
0.662