gene05764-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene05764-v1.0-hybrid T287249_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.857 0.915
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.778 0.915
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.778 0.915
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.778 0.915
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.778 0.915
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.722 0.809
estExt_fgenesh1_pg.C_Chr_13.00010057
M02366_2.00 		Ostreococcus tauri
NRMCCTANN
NNTAGGKYN		 PBM
Weirauch et al.(2014)
pTH9424 		0.714 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05764.1-v1.0-hybrid Myb 5 57

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_007242 Theobroma cacao TCM_007242 I 0.864
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.864
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.864
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.857
Pm002374 Prunus mume Pm002374 I 0.857
MDP0000239354 Malus domestica MDP0000239354 I 0.857
PK06103.1 Cannabis sativa PK06103.1 D 0.857
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.850
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.850
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.846
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.846
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.846
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.846
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.846
Ca_02232 Cicer arietinum Ca_02232 I 0.846
Ca_09355 Cicer arietinum Ca_09355 I 0.846
Cla014248 Citrullus lanatus Cla014248 I 0.846
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.846
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.846
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.846
MDP0000234807 Malus domestica MDP0000234807 I 0.839
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.837
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.837
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.837
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.830
Cla006547 Citrullus lanatus Cla006547 I 0.830
29812.m000204 Ricinus communis 29812.m000204 I 0.830
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.830
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.830
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.830
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.830
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.830
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.830
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.830
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.830
PK19870.1 Cannabis sativa PK19870.1 I 0.830
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.824
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.818
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.818
Pm021139 Prunus mume Pm021139 I 0.818
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.818
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.817
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.817
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.817
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.817
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.817
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.817
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.812
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.809
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.809
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.806
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.805
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.797
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.797
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.791
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.784
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.779
TRB2 Arabidopsis thaliana AT5G67580 D 0.778
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.778
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.778
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.778
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.778
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.778
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.777
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.769
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.768
29661.m000926 Ricinus communis 29661.m000926 I 0.768
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.768
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I 0.768
TCM_000807 Theobroma cacao TCM_000807 I 0.765
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.765
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.765
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.765
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.765
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.763
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.763
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.760
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.760
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.760
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.760
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.760
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.760
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.760
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.760
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.760
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.760
BGIOSGA035841 Oryza indica BGIOSGA035841 I 0.759
OB12G25520 Oryza brachyantha OB12G25520 I 0.759
OBART12G18680 Oryza barthii OBART12G18680 I 0.759
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I 0.759
OLONG_008332 Oryza longistaminata OLONG_008332 I 0.759
ONIVA12G17630 Oryza nivara ONIVA12G17630 I 0.759
OPUNC12G16890 Oryza punctata OPUNC12G16890 I 0.759
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I 0.759
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I 0.759
OS12G0613300 Oryza sativa OS12G0613300 I 0.759
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.750
OB01G30760 Oryza brachyantha OB01G30760 I 0.744
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.743
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.743
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.743
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.743
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.743
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.743
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.743
Si002467m.g Setaria italica Si002467m.g I 0.743
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.743
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.743
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.743
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.743
Ca_08043 Cicer arietinum Ca_08043 I 0.740
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.740
Bo3g096520 Brassica oleracea Bo3g096520 I 0.739
Bo9g019040 Brassica oleracea Bo9g019040 I 0.739
Bra024438 Brassica rapa Bra024438 I 0.739
Bra037837 Brassica rapa Bra037837 I 0.739
Bra037839 Brassica rapa Bra037839 I 0.739
OMERI12G14000 Oryza meridionalis OMERI12G14000 I 0.738
mgf009594m Mimulus guttatus mgf009594m I 0.735
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.728
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.728
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.728
Bo1g081300 Brassica oleracea Bo1g081300 I 0.726
Bra029978 Brassica rapa Bra029978 I 0.726
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.726
TRB1 Arabidopsis thaliana AT1G49950 D 0.722
Bo6g018740 Brassica oleracea Bo6g018740 I 0.722
Bra018818 Brassica rapa Bra018818 I 0.722
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.722
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.722
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.722
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.722
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.722
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.722
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.722
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.722
TRB3 Arabidopsis thaliana AT3G49850 I 0.721
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.721
Ca_02722 Cicer arietinum Ca_02722 I 0.721
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.719
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.719
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.719
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.719
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.718
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.718
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.716
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.716
mgf000125m Mimulus guttatus mgf000125m I 0.714
mgf010975m Mimulus guttatus mgf010975m I 0.714
estExt_fgenesh1_pg.C_Chr_13.00010057 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_13.00010057 D 0.714
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.710
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.710
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.709
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.709
OBART01G21150 Oryza barthii OBART01G21150 I 0.709
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.709
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.709
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.709
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.709
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.709
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.709
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.709
OS01G0589300 Oryza sativa OS01G0589300 I 0.709
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.704
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.704
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.704
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.704
Si002403m.g Setaria italica Si002403m.g I 0.704
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.704
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.704
Ca_10058 Cicer arietinum Ca_10058 I 0.699
mgf004823m Mimulus guttatus mgf004823m I 0.698
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.697
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.695
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.695
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.693
Bo5g077530 Brassica oleracea Bo5g077530 I 0.677
Bra039650 Brassica rapa Bra039650 I 0.677
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.674
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.674
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.673
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.670
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.670
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.670
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.670
Bo7g099090 Brassica oleracea Bo7g099090 I 0.668
Bra012919 Brassica rapa Bra012919 I 0.668
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.667
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.667
Bra036035 Brassica rapa Bra036035 I 0.664
Bo5g023860 Brassica oleracea Bo5g023860 I 0.662
Bra025967 Brassica rapa Bra025967 I 0.662
Bra030992 Brassica rapa Bra030992 I 0.661