GRMZM2G001824 (Zea mays)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GRMZM2G001824 T271871_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.781 0.817
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.781 0.817
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.779 0.860
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.744 0.774
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.744 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.693 0.828
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.670 0.742
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.670 0.742
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.670 0.742
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.668 0.645
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G001824_P01 Myb 65 112
GRMZM2G001824_P01 Myb 118 163

Links

Other Myb/SANT family TFs
Other Zea mays TFs

648 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29706.m001341 Ricinus communis 29706.m001341 N
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
ATMYB16 Arabidopsis thaliana AT5G15310 I
Bo4g198650 Brassica oleracea Bo4g198650 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N
F775_20859 Aegilops tauschii F775_20859 N
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
MDP0000413041 Malus domestica MDP0000413041 N
MDP0000793261 Malus domestica MDP0000793261 N
MDP0000825447 Malus domestica MDP0000825447 N
MLOC_39554 Hordeum vulgare MLOC_39554 I
MTR_1g087540 Medicago truncatula MTR_1g087540 N
OLONG_025203 Oryza longistaminata OLONG_025203 N
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.780
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.Ia03786 Panicum virgatum Pavir.Ia03786 N
Pavir.J14839 Panicum virgatum Pavir.J14839 N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.781
PK00358.1 Cannabis sativa PK00358.1 N
PK22972.1 Cannabis sativa PK22972.1 N
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N