OBART02G28240 (Oryza barthii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OBART02G28240 T275470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.774 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.774 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.774 0.804
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.771 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.771 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.771 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.771 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.771 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.753 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.753 0.804
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.744 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.698 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.698 0.739
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.671 0.630
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.671 0.630
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.671 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G28240.1 Myb 61 106

Links

Other Myb/SANT family TFs
Other Oryza barthii TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH70718 Xenopus laevis AAH70718 I
Aan_R007004 Calypte anna Aan_R007004 I
Aan_R011644 Calypte anna Aan_R011644 I
Afo_R000236 Aptenodytes forsteri Afo_R000236 I
Afo_R004692 Aptenodytes forsteri Afo_R004692 I
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I
Brh_R000160 Buceros rhinoceros Brh_R000160 I
Brh_R011012 Buceros rhinoceros Brh_R011012 I
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I
Cmyd_10016351 Chelonia mydas Cmyd_10016351 I
ZBTB18 Anolis carolinensis ENSACAG00000004296 I
ZBTB42 Anolis carolinensis ENSACAG00000011451 I
ENSAMEG00000019750 Ailuropoda melanoleuca ENSAMEG00000019750 I
ENSAPLG00000002367 Anas platyrhynchos ENSAPLG00000002367 I
ZBTB18 Bos taurus ENSBTAG00000000385 I
ENSBTAP00000000497-D1 Bos grunniens ENSBTAP00000000497-D1 I
ZBTB18 Callithrix jacchus ENSCJAG00000017087 I
ENSCPOG00000023254 Cavia porcellus ENSCPOG00000023254 I
ZBTB18 Dasypus novemcinctus ENSDNOG00000009334 I
ENSDORG00000000569 Dipodomys ordii ENSDORG00000000569 I
ZBTB18 Equus caballus ENSECAG00000018829 I
ZBTB18 Erinaceus europaeus ENSEEUG00000014181 I
ENSFALG00000011473 Ficedula albicollis ENSFALG00000011473 I
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I
ENSFCAG00000026731 Felis catus ENSFCAG00000026731 I
ZBTB18 Homo sapiens ENSG00000179456 D
zbtb18 Gasterosteus aculeatus ENSGACG00000010518 I
ZBTB18 Gallus gallus ENSGALG00000010705 I
ZBTB42 Gallus gallus ENSGALG00000023025 I
ZBTB18 Gorilla gorilla ENSGGOG00000028442 I
ENSGMOG00000018718 Gadus morhua ENSGMOG00000018718 I
ENSLACG00000009889 Latimeria chalumnae ENSLACG00000009889 I
ZBTB18 Loxodonta africana ENSLAFG00000002879 I
ENSLOCG00000017349 Lepisosteus oculatus ENSLOCG00000017349 I
ENSMEUG00000009369 Macropus eugenii ENSMEUG00000009369 I
ZBTB18 Meleagris gallopavo ENSMGAG00000011476 I
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I
ZBTB18 Microcebus murinus ENSMICG00000007600 I
ZBTB18 Myotis lucifugus ENSMLUG00000011285 I
ZBTB18 Macaca mulatta ENSMMUG00000015664 I
ZBTB18 Monodelphis domestica ENSMODG00000006570 I
ZBTB42 Monodelphis domestica ENSMODG00000013701 I
ENSMPUG00000015734 Mustela putorius furo ENSMPUG00000015734 I
Zbtb18 Mus musculus ENSMUSG00000063659 I
ZBTB18 Ornithorhynchus anatinus ENSOANG00000010257 I
ZBTB18 Oryctolagus cuniculus ENSOCUG00000007968 I
ZBTB18 Otolemur garnettii ENSOGAG00000013580 I
ENSONIG00000000862 Oreochromis niloticus ENSONIG00000000862 I
zbtb18 Oryzias latipes ENSORLG00000004823 I
ENSP00000351539 Macaca fascicularis ENSP00000351539 I
ENSPANG00000021934 Papio anubis ENSPANG00000021934 I
ENSPFOG00000022080 Poecilia formosa ENSPFOG00000022080 I
ENSPPYG00000000059 Pongo abelii ENSPPYG00000000059 I
ZBTB18 Pan troglodytes ENSPTRG00000002175 I
ZBTB18 Pteropus vampyrus ENSPVAG00000011441 I
Zfp238 Rattus norvegicus ENSRNOG00000004423 I
ZBTB18 Sorex araneus ENSSARG00000002984 I
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I
ENSSHAG00000008659 Sarcophilus harrisii ENSSHAG00000008659 I
ENSSSCG00000030070 Sus scrofa ENSSSCG00000030070 I
ENSSTOG00000004290 Ictidomys tridecemlineatus ENSSTOG00000004290 I
ZBTB18 Taeniopygia guttata ENSTGUG00000008247 I
zbtb18 Tetraodon nigroviridis ENSTNIG00000000430 I
zbtb18 Takifugu rubripes ENSTRUG00000000952 I
ENSTSYG00000004607 Tarsius syrichta ENSTSYG00000004607 I
ZBTB18 Tursiops truncatus ENSTTRG00000000615 I
ENSXMAG00000018241 Xiphophorus maculatus ENSXMAG00000018241 I
Gfo_R006792 Geospiza fortis Gfo_R006792 I
Gfo_R011040 Geospiza fortis Gfo_R011040 I
Myotis_brandtii_ZNF238_10003031 Myotis brandtii Myotis_brandtii_ZNF238_10003031 I
Ogr11588 Ophisaurus gracilis Ogr11588 I
Pvit_01078 Pogona vitticeps Pvit_01078 I
zbtb18 Xenopus tropicalis XB-GENE-1003542 I
zbtb18.L Xenopus laevis XB-GENE-1003548 I
znf238.2.L Xenopus laevis XB-GENE-1219070 I