CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORUFI02G38880 *(Oryza rufipogon)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	ORUFI02G38880	T276916_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TRP5 M01266_2.00	Arabidopsis thaliana	NHWAAACCYH	DRGGTTTWDN	PBM Lambert et al.(2019) pTH9963	0.792	0.894
PK21687.1 M01282_2.00	Cannabis sativa	HWAAACCYH	DRGGTTTWD	PBM Lambert et al.(2019) pTH11299	0.792	0.872
TRP2 M07092_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCC	GGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_col_a	0.792	0.872
TRP2 M07093_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCT	AGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP2_colamp_a	0.792	0.872
TRP1 M07148_2.00	Arabidopsis thaliana	AAACCCTAAACCCTAAACCCTAA	TTAGGGTTTAGGGTTTAGGGTTT	Dap-seq OMalley et al.(2016) TRP1_col	0.774	0.872
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORUFI02G38880.1	Myb	700	750	RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV
ORUFI02G38880.2	Myb	669	719	RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV

Links
Other Myb/SANT family TFs
Other *Oryza rufipogon* TFs