Cagra.1111s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1111s0025 T286013_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.898 0.989
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.898 0.989
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.844 0.882
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.844 0.882
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.753 0.828
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.727 0.753
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.717 0.774
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.693 0.742
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.693 0.742
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.693 0.742
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.691 0.753
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.681 0.656
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.673 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1111s0025.1.p Myb 24 71
Cagra.1111s0025.1.p Myb 77 122

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

674 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP12390 Atta cephalotes ACEP12390 I
ANCCAN_22838 Ancylostoma caninum ANCCAN_22838 I
ANCDUO_17312 Ancylostoma duodenale ANCDUO_17312 I
ENSAPLG00000001061 Anas platyrhynchos ENSAPLG00000001061 I
ENSBTAG00000021574 Bos taurus ENSBTAG00000021574 I
Lef1 Dipodomys ordii ENSDORG00000007694 I
ENSMEUG00000006871 Macropus eugenii ENSMEUG00000006871 I
ENSMGAG00000010940 Meleagris gallopavo ENSMGAG00000010940 I
LEF1 Microcebus murinus ENSMICG00000012833 I
ENSOANG00000020465 Ornithorhynchus anatinus ENSOANG00000020465 I
ENSPSIG00000009828 Pelodiscus sinensis ENSPSIG00000009828 I
LEF1 Tupaia belangeri ENSTBEG00000011345 I
ENSTNIG00000019242 Tetraodon nigroviridis ENSTNIG00000019242 N
ENSTRUG00000006849 Takifugu rubripes ENSTRUG00000006849 N
estExt_fgenesh1_pg.C_770024 Bigelowiella natans estExt_fgenesh1_pg.C_770024 N
HelroG147401 Helobdella robusta HelroG147401 I
MCOS_0000647601 Mesocestoides corti MCOS_0000647601 I
PXEA_0003283501 Protopolystoma xenopodis PXEA_0003283501 I
SINV11535 Solenopsis invicta SINV11535 I
SPER_0000261701 Spirometra erinaceieuropaei SPER_0000261701 I
SROB_0001994501 Schistosoma rodhaini SROB_0001994501 I
TRE_0001036901 Trichobilharzia regenti TRE_0001036901 I