Carubv10007254m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10007254m.g T286271_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.867 0.978
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.839 0.935
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.780 0.870
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.780 0.870
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.780 0.870
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.685 0.761
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.685 0.761
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.678 0.761
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.678 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007254m Myb 22 69
Carubv10007254m Myb 75 119

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP19737 Atta cephalotes ACEP19737 I
CGI_10011126 Crassostrea gigas CGI_10011126 I
FOXN3 Anolis carolinensis ENSACAG00000012791 I
FOXN2 Anolis carolinensis ENSACAG00000014236 I
ENSAMEG00000001627 Ailuropoda melanoleuca ENSAMEG00000001627 I
ENSAMEG00000006413 Ailuropoda melanoleuca ENSAMEG00000006413 I
ENSAMXG00000001149 Astyanax mexicanus ENSAMXG00000001149 I
ENSAMXG00000009484 Astyanax mexicanus ENSAMXG00000009484 I
ENSAMXG00000018596 Astyanax mexicanus ENSAMXG00000018596 I
ENSAPLG00000009060 Anas platyrhynchos ENSAPLG00000009060 I
ENSAPLG00000016372 Anas platyrhynchos ENSAPLG00000016372 I
FOXN2 Bos taurus ENSBTAG00000015151 I
FOXN3 Canis familiaris ENSCAFG00000011068 I
FOXN2 Canis familiaris ENSCAFG00000029603 I
FOXN2 Callithrix jacchus ENSCJAG00000010894 I
FOXN3 Callithrix jacchus ENSCJAG00000017620 I
FOXN3 Cavia porcellus ENSCPOG00000004079 I
ENSCPOG00000026162 Cavia porcellus ENSCPOG00000026162 I
ENSCSAG00000013601 Chlorocebus sabaeus ENSCSAG00000013601 I
foxn3 Danio rerio ENSDARG00000012833 I
ches1 Danio rerio ENSDARG00000043553 I
foxn2b Danio rerio ENSDARG00000045105 I
CABZ01056727.1 Danio rerio ENSDARG00000055574 I
FOXN3 Dasypus novemcinctus ENSDNOG00000003188 I
FOXN2 Dasypus novemcinctus ENSDNOG00000035609 I
Foxn2 Dipodomys ordii ENSDORG00000007020 I
FOXN2 Equus caballus ENSECAG00000008390 I
ENSEEUG00000008958 Erinaceus europaeus ENSEEUG00000008958 I
FOXN2 Erinaceus europaeus ENSEEUG00000015228 I
FOXN2 Echinops telfairi ENSETEG00000007413 I
ENSFALG00000011112 Ficedula albicollis ENSFALG00000011112 I
ENSFALG00000012332 Ficedula albicollis ENSFALG00000012332 I
FOXN3 Felis catus ENSFCAG00000012929 I
FOXN2 Felis catus ENSFCAG00000022828 I
FOXN3 Homo sapiens ENSG00000053254 D
FOXN2 Homo sapiens ENSG00000170802 D
foxn2b Gasterosteus aculeatus ENSGACG00000005486 I
FOXN2 Gallus gallus ENSGALG00000008942 I
FOXN3 Gallus gallus ENSGALG00000010665 I
FOXN2 Gorilla gorilla ENSGGOG00000008171 I
FOXN3 Gorilla gorilla ENSGGOG00000023852 I
ENSGMOG00000003346 Gadus morhua ENSGMOG00000003346 I
ENSGMOG00000016028 Gadus morhua ENSGMOG00000016028 I
ENSGMOG00000018188 Gadus morhua ENSGMOG00000018188 I
ENSLACG00000006234 Latimeria chalumnae ENSLACG00000006234 I
ENSLACG00000013808 Latimeria chalumnae ENSLACG00000013808 I
ENSLACG00000015298 Latimeria chalumnae ENSLACG00000015298 I
FOXN2 Loxodonta africana ENSLAFG00000012466 I
FOXN3 Loxodonta africana ENSLAFG00000016005 I
ENSLOCG00000000880 Lepisosteus oculatus ENSLOCG00000000880 I
ENSLOCG00000016292 Lepisosteus oculatus ENSLOCG00000016292 I
ENSMEUG00000000214 Macropus eugenii ENSMEUG00000000214 I
FOXN2 Meleagris gallopavo ENSMGAG00000005062 I
FOXN3 Meleagris gallopavo ENSMGAG00000013026 I
FOXN3 Myotis lucifugus ENSMLUG00000008780 I
FOXN2 Myotis lucifugus ENSMLUG00000017567 I
FOXN3 Macaca mulatta ENSMMUG00000019898 I
FOXN2 Macaca mulatta ENSMMUG00000020677 I
FOXN2 Monodelphis domestica ENSMODG00000001169 I
ENSMPUG00000008174 Mustela putorius furo ENSMPUG00000008174 I
ENSMPUG00000010993 Mustela putorius furo ENSMPUG00000010993 I
Foxn3 Mus musculus ENSMUSG00000033713 I
Foxn2 Mus musculus ENSMUSG00000034998 I
ENSNLEG00000008649 Nomascus leucogenys ENSNLEG00000008649 I
ENSNLEG00000016989 Nomascus leucogenys ENSNLEG00000016989 I
ENSOARG00000004763 Ovis aries ENSOARG00000004763 I
FOXN3 Oryctolagus cuniculus ENSOCUG00000004392 I
FOXN2 Oryctolagus cuniculus ENSOCUG00000009784 I
FOXN3 Otolemur garnettii ENSOGAG00000001733 I
FOXN2 Otolemur garnettii ENSOGAG00000011745 I
ENSONIG00000001158 Oreochromis niloticus ENSONIG00000001158 I
ENSONIG00000009856 Oreochromis niloticus ENSONIG00000009856 I
FOXN3 Ochotona princeps ENSOPRG00000002931 I
FOXN2 Ochotona princeps ENSOPRG00000007661 I
ches1 Oryzias latipes ENSORLG00000010729 I
foxn2b Oryzias latipes ENSORLG00000011005 I
ENSP00000261302 Macaca fascicularis ENSP00000261302 I
ENSP00000343633 Macaca fascicularis ENSP00000343633 I
ENSP00000394031-D1 Bos grunniens ENSP00000394031-D1 I
ENSPANG00000013263 Papio anubis ENSPANG00000013263 I
ENSPANG00000016397 Papio anubis ENSPANG00000016397 I
FOXN2 Procavia capensis ENSPCAG00000005254 I
FOXN3 Procavia capensis ENSPCAG00000013761 I
ENSPFOG00000001305 Poecilia formosa ENSPFOG00000001305 I
ENSPFOG00000015286 Poecilia formosa ENSPFOG00000015286 I
ENSPPYG00000012423 Pongo abelii ENSPPYG00000012423 I
ENSPSIG00000013517 Pelodiscus sinensis ENSPSIG00000013517 I
FOXN3 Pan troglodytes ENSPTRG00000006614 I
FOXN2 Pan troglodytes ENSPTRG00000011908 I
FOXN2 Pteropus vampyrus ENSPVAG00000003737 I
Foxn3 Rattus norvegicus ENSRNOG00000004709 I
Foxn2 Rattus norvegicus ENSRNOG00000040110 I
FOXN2 Sorex araneus ENSSARG00000003696 I
ENSSHAG00000001461 Sarcophilus harrisii ENSSHAG00000001461 I
ENSSHAG00000010850 Sarcophilus harrisii ENSSHAG00000010850 I
FOXN3 Sus scrofa ENSSSCG00000002429 I
FOXN2 Sus scrofa ENSSSCG00000029593 I
ENSSTOG00000000862 Ictidomys tridecemlineatus ENSSTOG00000000862 I
ENSSTOG00000014643 Ictidomys tridecemlineatus ENSSTOG00000014643 I
FOXN3 Tupaia belangeri ENSTBEG00000003603 I
ENSTGUG00000012441 Taeniopygia guttata ENSTGUG00000012441 I
foxn2b Tetraodon nigroviridis ENSTNIG00000016601 I
ches1 Takifugu rubripes ENSTRUG00000003497 I
foxn2b Takifugu rubripes ENSTRUG00000013724 I
ENSTSYG00000014704 Tarsius syrichta ENSTSYG00000014704 I
FOXN3 Tursiops truncatus ENSTTRG00000000817 I
FOXN2 Tursiops truncatus ENSTTRG00000003735 I
FOXN2 Vicugna pacos ENSVPAG00000009218 I
gw.10.104.1 Branchiostoma floridae gw.10.104.1 I
gw.384.13.1 Branchiostoma floridae gw.384.13.1 I
HMEL010214 Heliconius melpomene HMEL010214 I
KGM_12006 Danaus plexippus KGM_12006 I
L798_02484 Zootermopsis nevadensis L798_02484 I
Myotis_brandtii_FOXN2_10033482 Myotis brandtii Myotis_brandtii_FOXN2_10033482 I
NEMVEDRAFT_v1g67209 Nematostella vectensis NEMVEDRAFT_v1g67209 D
Ogr01321 Ophisaurus gracilis Ogr01321 I
Ogr07715 Ophisaurus gracilis Ogr07715 I
Pvit_15105 Pogona vitticeps Pvit_15105 I
Sakowv30028653m.g Saccoglossus kowalevskii Sakowv30028653m.g I
SINV12530 Solenopsis invicta SINV12530 I
TC030764 Tribolium castaneum TC030764 I
tetur19g01540 Tetranychus urticae tetur19g01540 I
foxn3 Xenopus tropicalis XB-GENE-483117 I
foxn2 Xenopus tropicalis XB-GENE-952918 I
foxn2.S Xenopus laevis XB-GENE-952923 I