CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Ciclev10011452m.g *(Citrus clementina)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Ciclev10011452m.g	T286538_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB3R5 M07116_2.00	Arabidopsis thaliana	NWWWWNTDRCCGTTR	YAACGGYHANWWWWN	Dap-seq OMalley et al.(2016) MYB3R5_col_a	0.781	0.886
PK12011.1 M01279_2.00	Cannabis sativa	HAACGGHHNN	NNDDCCGTTD	PBM Lambert et al.(2019) pTH11423	0.698	0.786
PC-MYB1 M07110_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R1_col_a	0.693	0.743
PC-MYB1 M07111_2.00	Arabidopsis thaliana	DWHNTDRCCGTTR	YAACGGYHANDWH	Dap-seq OMalley et al.(2016) MYB3R1_colamp_a	0.693	0.743
Q948S5_TOBAC M11074_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBA2_01	0.675	0.764
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10011446m	Myb	60	106	KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
Ciclev10011446m	Myb	112	158	KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
Ciclev10011446m	Myb	164	209	KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL
Ciclev10011452m	Myb	60	106	KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
Ciclev10011452m	Myb	112	158	KGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHL
Ciclev10011452m	Myb	164	209	KDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNSIKNHWNSSL

Links
Other Myb/SANT family TFs
Other *Citrus clementina* TFs