PK12011.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK12011.1 T290396_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12011.1
M01279_2.00		 Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.800 0.871
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.800 0.871
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.797 0.928
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.727 0.842
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.690 0.820
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.664 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01279_2.00 Myb 37 83
M01279_2.00 Myb 89 135
M01279_2.00 Myb 141 185

DNA Binding Domains

Protein ID Domain From To Sequence
PK12011.1 Myb 37 83
PK12011.1 Myb 89 135
PK12011.1 Myb 141 185

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.848
MDP0000295807 Malus domestica MDP0000295807 I 0.842
MDP0000179225 Malus domestica MDP0000179225 I 0.835
Ca_14925 Cicer arietinum Ca_14925 I 0.821
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.813
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.812
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.811
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.811
29794.m003447 Ricinus communis 29794.m003447 I 0.809
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.807
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.800
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.800
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.800
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.800
Cla022565 Citrullus lanatus Cla022565 I 0.798
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.798
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.798
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.798
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.797
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.796
TCM_047091 Theobroma cacao TCM_047091 I 0.796
mgf008601m Mimulus guttatus mgf008601m I 0.795
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.795
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.794
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.793
Bo7g115810 Brassica oleracea Bo7g115810 I 0.792
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.790
Bo3g171130 Brassica oleracea Bo3g171130 I 0.789
Bra034531 Brassica rapa Bra034531 I 0.789
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.788
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.783
Pm005124 Prunus mume Pm005124 I 0.782
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.780
Cla023357 Citrullus lanatus Cla023357 I 0.779
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.779
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.779
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.777
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.776
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.772
Bo1g010040 Brassica oleracea Bo1g010040 I 0.769
Bra011376 Brassica rapa Bra011376 I 0.769
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.766
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.764
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.764
Bra037045 Brassica rapa Bra037045 I 0.762
Bo3g007070 Brassica oleracea Bo3g007070 I 0.751
Bo3g179620 Brassica oleracea Bo3g179620 I 0.751
Ca_01884 Cicer arietinum Ca_01884 I 0.751
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.747
mgf006384m Mimulus guttatus mgf006384m I 0.744
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.743
Si000842m.g Setaria italica Si000842m.g I 0.742
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.742
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.742
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.742
Bra006102 Brassica rapa Bra006102 I 0.741
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.740
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.740
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.740
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.739
PK22174.1 Cannabis sativa PK22174.1 I 0.739
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.736
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.733
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.731
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.730
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.730
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.727
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.727
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.727
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.727
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.727
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.727
OB12G16480 Oryza brachyantha OB12G16480 I 0.726
OBART01G08110 Oryza barthii OBART01G08110 I 0.726
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.726
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.726
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.726
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.726
OS12G0238000 Oryza sativa OS12G0238000 I 0.726
Bo9g171130 Brassica oleracea Bo9g171130 I 0.725
Bra008956 Brassica rapa Bra008956 I 0.725
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.724
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.724
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.724
MYB3R-2 Oryza sativa OS01G0841500 I 0.724
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.720
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.720
F775_05724 Aegilops tauschii F775_05724 I 0.719
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.719
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.718
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.718
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.718
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.716
OB01G18340 Oryza brachyantha OB01G18340 I 0.715
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.715
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.714
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.713
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.711
Bo1g144510 Brassica oleracea Bo1g144510 I 0.710
Bra034067 Brassica rapa Bra034067 I 0.710
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.706
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.706
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.700
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.700
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.700
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.700
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.698
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.698
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.698
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.697
OB01G45570 Oryza brachyantha OB01G45570 I 0.694
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.694
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.693
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.693
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.692
Cla018173 Citrullus lanatus Cla018173 I 0.692
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.691
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.691
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.690
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.689
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.688
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.686
OBART05G19200 Oryza barthii OBART05G19200 I 0.686
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.686
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.686
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.686
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.686
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.685
TCM_021936 Theobroma cacao TCM_021936 I 0.685
Pm002704 Prunus mume Pm002704 I 0.685
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.685
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.683
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.682
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.682
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.682
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.682
29846.m000184 Ricinus communis 29846.m000184 I 0.681
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.680
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.679
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.678
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.678
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.678
mgf019610m Mimulus guttatus mgf019610m I 0.678
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.677
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.676
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.676
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.675
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.674
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.673
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.673
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.673
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.672
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.670
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.669
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.669
MDP0000219581 Malus domestica MDP0000219581 I 0.665
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.664
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.664
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.664
OS05G0459000 Oryza sativa OS05G0459000 I 0.664
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.664
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.664
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.663
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.662