PC-MYB1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.7__866__AT4G32730.2 T270844_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.909 1.000
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.909 1.000
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.828 0.885
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.800 0.871
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.757 0.835
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.680 0.791
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.670 0.719
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.7__866__AT4G32730.2 Myb 35 81
fgenesh2_kg.7__866__AT4G32730.2 Myb 87 133
fgenesh2_kg.7__866__AT4G32730.2 Myb 139 183

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.909
Bo3g171130 Brassica oleracea Bo3g171130 I 0.894
Bra034531 Brassica rapa Bra034531 I 0.894
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.893
Bo7g115810 Brassica oleracea Bo7g115810 I 0.882
Bo1g010040 Brassica oleracea Bo1g010040 I 0.878
Bra011376 Brassica rapa Bra011376 I 0.878
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.853
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.853
Bra037045 Brassica rapa Bra037045 I 0.852
29794.m003447 Ricinus communis 29794.m003447 I 0.844
Ca_14925 Cicer arietinum Ca_14925 I 0.840
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.835
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.834
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.831
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.829
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.829
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.828
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.826
MDP0000295807 Malus domestica MDP0000295807 I 0.825
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.816
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.815
TCM_047091 Theobroma cacao TCM_047091 I 0.815
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.813
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.813
Cla022565 Citrullus lanatus Cla022565 I 0.813
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.813
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.813
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.813
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.811
MDP0000179225 Malus domestica MDP0000179225 I 0.811
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.810
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.809
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.809
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.800
PK12011.1 Cannabis sativa PK12011.1 D 0.800
Cla023357 Citrullus lanatus Cla023357 I 0.795
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.795
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.795
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.790
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.785
Pm005124 Prunus mume Pm005124 I 0.781
mgf008601m Mimulus guttatus mgf008601m I 0.781
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.774
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.773
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.773
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.771
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.771
Ca_01884 Cicer arietinum Ca_01884 I 0.766
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.764
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.763
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.763
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.759
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.757
Bo9g171130 Brassica oleracea Bo9g171130 I 0.757
Bra008956 Brassica rapa Bra008956 I 0.757
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.757
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.757
OBART01G08110 Oryza barthii OBART01G08110 I 0.756
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.756
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.756
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.756
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.756
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.754
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.754
OB12G16480 Oryza brachyantha OB12G16480 I 0.750
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.750
OS12G0238000 Oryza sativa OS12G0238000 I 0.750
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.750
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.750
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.748
mgf006384m Mimulus guttatus mgf006384m I 0.745
F775_05724 Aegilops tauschii F775_05724 I 0.743
OB01G18340 Oryza brachyantha OB01G18340 I 0.739
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.739
Bo3g007070 Brassica oleracea Bo3g007070 I 0.737
Bo3g179620 Brassica oleracea Bo3g179620 I 0.737
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.735
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.734
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.732
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.731
PK22174.1 Cannabis sativa PK22174.1 I 0.728
Bra006102 Brassica rapa Bra006102 I 0.725
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.721
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.721
MYB3R-2 Oryza sativa OS01G0841500 I 0.721
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.718
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.716
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.712
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.711
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.710
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.710
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.705
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.699
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.699
Si000842m.g Setaria italica Si000842m.g I 0.699
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.699
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.699
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.699
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.697
Pm018007 Prunus mume Pm018007 I 0.696
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.695
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.694
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.693
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.693
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.693
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.692
Cla018173 Citrullus lanatus Cla018173 I 0.691
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.691
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.688
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.687
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.687
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.686
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.683
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.682
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.682
Pm002704 Prunus mume Pm002704 I 0.682
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.680
Bo1g144510 Brassica oleracea Bo1g144510 I 0.680
Bra034067 Brassica rapa Bra034067 I 0.680
OBART05G19200 Oryza barthii OBART05G19200 I 0.680
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.680
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.680
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.680
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.678
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.678
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.676
29846.m000184 Ricinus communis 29846.m000184 I 0.676
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.676
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.675
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.675
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.675
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.675
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.675
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.674
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.674
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.673
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.673
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.671
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.670
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.670
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.669
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.669
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.668
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.667
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.666
Si021484m.g Setaria italica Si021484m.g I 0.666
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.665
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.664
TCM_005402 Theobroma cacao TCM_005402 I 0.663
TCM_021936 Theobroma cacao TCM_021936 I 0.662
e_gw1.6.395.1 Monosiga brevicollis e_gw1.6.395.1 I 0.662
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.662