Q948S4_TOBAC (Nicotiana tabacum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Q948S4_TOBAC T283696_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S4_TOBAC
M11073_2.00		 Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.683 0.754
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.670 0.725
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.670 0.725
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q948S4_TOBAC Myb 55 100
Q948S4_TOBAC Myb 106 152
Q948S4_TOBAC Myb 158 202

Links

Other Myb/SANT family TFs
Other Nicotiana tabacum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.853
PGSC0003DMG400003055 Solanum tuberosum PGSC0003DMG400003055 I 0.830
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.728
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.706
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.704
TCM_047091 Theobroma cacao TCM_047091 I 0.698
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.691
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.690
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.687
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.687
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.685
Cla022565 Citrullus lanatus Cla022565 I 0.684
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.684
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.684
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.684
Pm018007 Prunus mume Pm018007 I 0.683
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.683
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.682
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.682
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.682
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.682
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.682
Ca_14925 Cicer arietinum Ca_14925 I 0.679
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.678
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.677
Bo7g115810 Brassica oleracea Bo7g115810 I 0.676
TCM_016203 Theobroma cacao TCM_016203 I 0.676
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.675
Pm005124 Prunus mume Pm005124 I 0.673
MDP0000179225 Malus domestica MDP0000179225 I 0.673
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.672
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.670
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.670
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.670
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.670
Bo1g010040 Brassica oleracea Bo1g010040 I 0.669
Bra011376 Brassica rapa Bra011376 I 0.669
29794.m003447 Ricinus communis 29794.m003447 I 0.669
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.669
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.667
Bo3g171130 Brassica oleracea Bo3g171130 I 0.665
Bra034531 Brassica rapa Bra034531 I 0.665
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.665
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.664
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.663
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.663
TCM_005402 Theobroma cacao TCM_005402 I 0.663