Thhalv10024320m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10024320m.g T290138_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.829 0.940
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.829 0.940
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.765 0.843
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.742 0.828
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.718 0.806
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.675 0.716
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10024320m Myb 4 45
Thhalv10024320m Myb 51 97
Thhalv10024320m Myb 103 147

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.829
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.829
Bo7g115810 Brassica oleracea Bo7g115810 I 0.819
Bo3g171130 Brassica oleracea Bo3g171130 I 0.814
Bra034531 Brassica rapa Bra034531 I 0.814
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.812
Bo1g010040 Brassica oleracea Bo1g010040 I 0.798
Bra011376 Brassica rapa Bra011376 I 0.798
29794.m003447 Ricinus communis 29794.m003447 I 0.798
Bra037045 Brassica rapa Bra037045 I 0.790
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.777
Pm005124 Prunus mume Pm005124 I 0.773
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.773
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.773
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.771
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.769
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.768
TCM_047091 Theobroma cacao TCM_047091 I 0.768
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.768
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.768
MDP0000295807 Malus domestica MDP0000295807 I 0.767
Ca_14925 Cicer arietinum Ca_14925 I 0.766
Cla022565 Citrullus lanatus Cla022565 I 0.766
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.766
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.766
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.766
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.765
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.762
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.759
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.756
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.756
Ca_01884 Cicer arietinum Ca_01884 I 0.756
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.753
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.753
MDP0000179225 Malus domestica MDP0000179225 I 0.753
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.752
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.751
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.748
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.744
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.744
F775_05724 Aegilops tauschii F775_05724 I 0.743
PK12011.1 Cannabis sativa PK12011.1 D 0.742
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.739
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.739
Cla023357 Citrullus lanatus Cla023357 I 0.737
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.737
mgf006384m Mimulus guttatus mgf006384m I 0.736
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.735
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.735
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.735
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.735
mgf008601m Mimulus guttatus mgf008601m I 0.734
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.734
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.734
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.733
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.731
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.729
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.726
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.726
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.724
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.720
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.718
Bo9g171130 Brassica oleracea Bo9g171130 I 0.718
Bra008956 Brassica rapa Bra008956 I 0.718
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.718
OBART01G08110 Oryza barthii OBART01G08110 I 0.718
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.718
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.718
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.716
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.716
Bra006102 Brassica rapa Bra006102 I 0.715
OB12G16480 Oryza brachyantha OB12G16480 I 0.712
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.712
OS12G0238000 Oryza sativa OS12G0238000 I 0.712
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.712
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.712
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.703
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.702
OB01G18340 Oryza brachyantha OB01G18340 I 0.701
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.700
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.700
MYB3R-2 Oryza sativa OS01G0841500 I 0.700
Bo3g007070 Brassica oleracea Bo3g007070 I 0.698
Bo3g179620 Brassica oleracea Bo3g179620 I 0.698
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.697
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.694
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.692
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.692
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.690
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.689
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.684
PK22174.1 Cannabis sativa PK22174.1 I 0.683
29846.m000184 Ricinus communis 29846.m000184 I 0.678
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.676
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.676
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.675
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.674
Contig1271.1.g45 Oxytricha trifallax Contig1271.1.g45 N 0.674
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.672
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.672
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.672
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.672
Pm018007 Prunus mume Pm018007 I 0.670
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.670
Si021484m.g Setaria italica Si021484m.g I 0.667
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.666
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.666
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.665
Si000842m.g Setaria italica Si000842m.g I 0.665
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.665
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.665
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.664
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.664
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.663
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.662
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.661
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.661
Pm002704 Prunus mume Pm002704 I 0.661
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.661