Gorai.010G110000 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.010G110000 T287743_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.835 0.914
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.800 0.856
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.800 0.856
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.787 0.849
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.779 0.878
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.706 0.748
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.664 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G110000.1 Myb 39 85
Gorai.010G110000.1 Myb 91 138
Gorai.010G110000.1 Myb 144 188
Gorai.010G110000.2 Myb 39 85
Gorai.010G110000.2 Myb 91 137
Gorai.010G110000.2 Myb 143 187

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_047091 Theobroma cacao TCM_047091 I 0.892
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.875
Cla022565 Citrullus lanatus Cla022565 I 0.873
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.873
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.873
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.873
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.869
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.868
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.864
29794.m003447 Ricinus communis 29794.m003447 I 0.862
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.859
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.859
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.848
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.848
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.846
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.843
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.839
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.837
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.835
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.835
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.834
Cla023357 Citrullus lanatus Cla023357 I 0.833
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.833
MDP0000179225 Malus domestica MDP0000179225 I 0.833
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.826
MDP0000295807 Malus domestica MDP0000295807 I 0.826
mgf008601m Mimulus guttatus mgf008601m I 0.824
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.821
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.821
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.821
Pm005124 Prunus mume Pm005124 I 0.820
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.819
Ca_14925 Cicer arietinum Ca_14925 I 0.819
Ca_01884 Cicer arietinum Ca_01884 I 0.811
Bo7g115810 Brassica oleracea Bo7g115810 I 0.808
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.800
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.800
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.800
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.800
Bo1g010040 Brassica oleracea Bo1g010040 I 0.795
Bo3g171130 Brassica oleracea Bo3g171130 I 0.795
Bra011376 Brassica rapa Bra011376 I 0.795
Bra034531 Brassica rapa Bra034531 I 0.795
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.794
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.787
Bo9g171130 Brassica oleracea Bo9g171130 I 0.787
Bra008956 Brassica rapa Bra008956 I 0.787
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.787
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.787
Bra037045 Brassica rapa Bra037045 I 0.779
PK12011.1 Cannabis sativa PK12011.1 D 0.779
mgf006384m Mimulus guttatus mgf006384m I 0.774
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.770
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.770
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.769
Bo3g007070 Brassica oleracea Bo3g007070 I 0.760
Bo3g179620 Brassica oleracea Bo3g179620 I 0.760
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.760
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.757
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.756
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.753
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.753
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.753
OB12G16480 Oryza brachyantha OB12G16480 I 0.747
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.747
OS12G0238000 Oryza sativa OS12G0238000 I 0.747
PK22174.1 Cannabis sativa PK22174.1 I 0.745
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.744
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.744
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.744
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.743
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.740
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.740
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.739
Bra006102 Brassica rapa Bra006102 I 0.737
OB01G18340 Oryza brachyantha OB01G18340 I 0.736
OBART01G08110 Oryza barthii OBART01G08110 I 0.732
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.732
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.732
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.732
F775_05724 Aegilops tauschii F775_05724 I 0.731
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.728
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.728
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.723
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.723
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.715
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.711
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.710
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.707
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.707
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.706
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.704
Pm018007 Prunus mume Pm018007 I 0.702
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.701
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.701
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.700
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.697
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.697
MYB3R-2 Oryza sativa OS01G0841500 I 0.697
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.697
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.696
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.696
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.695
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.694
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.691
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.686
Pm002704 Prunus mume Pm002704 I 0.686
Cla018173 Citrullus lanatus Cla018173 I 0.685
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.685
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.682
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.682
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.681
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.681
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.679
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.679
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.679
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.679
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.679
cassava40167.m1 Manihot esculenta cassava40167.m1 I 0.678
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.678
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.677
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.677
Si000842m.g Setaria italica Si000842m.g I 0.675
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.675
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.675
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.673
TCM_005402 Theobroma cacao TCM_005402 I 0.672
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.671
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.671
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.671
PGSC0003DMG400003055 Solanum tuberosum PGSC0003DMG400003055 I 0.668
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.667
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.667
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.666
TCM_021936 Theobroma cacao TCM_021936 I 0.666
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.666
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.665
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.665
29846.m000184 Ricinus communis 29846.m000184 I 0.665
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.664
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.661