TCM_005402 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_005402 T280447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.663 0.759
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.663 0.759
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.663 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX96058 Myb 57 103
EOX96058 Myb 109 155
EOX96058 Myb 161 203

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G117400 Gossypium raimondii Gorai.008G117400 N 0.784
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.736
Pm018007 Prunus mume Pm018007 I 0.733
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.727
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.720
ATMYB3R2 Vitis vinifera VIT_15s0048g02120 N 0.717
evm.TU.supercontig_18.208 Carica papaya evm.TU.supercontig_18.208 N 0.710
cassava40167.m1 Manihot esculenta cassava40167.m1 I 0.701
TCM_047091 Theobroma cacao TCM_047091 I 0.682
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.682
29794.m003447 Ricinus communis 29794.m003447 I 0.679
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.677
MDP0000295807 Malus domestica MDP0000295807 I 0.673
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.672
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.668
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.668
OBART01G08110 Oryza barthii OBART01G08110 I 0.666
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.666
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.666
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.666
Solyc08g080580.2 Solanum lycopersicum Solyc08g080580.2 I 0.666
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.665
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.665
Cla022565 Citrullus lanatus Cla022565 I 0.665
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.665
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.665
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.665
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.665
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.665
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.665
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.663
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.663
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.663
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.663