Pavir.Ea00087 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ea00087 T289116_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.777 0.856
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.750 0.813
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.750 0.813
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.720 0.835
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.718 0.791
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.669 0.763
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.661 0.755
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00087.1.p Myb 50 96
Pavir.Ea00087.1.p Myb 102 148
Pavir.Ea00087.1.p Myb 154 198
Pavir.Ea00087.2.p Myb 50 96
Pavir.Ea00087.2.p Myb 102 148
Pavir.Ea00087.2.p Myb 154 198
Pavir.Ea00087.3.p Myb 50 96
Pavir.Ea00087.3.p Myb 102 148
Pavir.Ea00087.3.p Myb 154 198

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.909
OB12G16480 Oryza brachyantha OB12G16480 I 0.903
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.903
OS12G0238000 Oryza sativa OS12G0238000 I 0.897
OB01G18340 Oryza brachyantha OB01G18340 I 0.892
OBART01G08110 Oryza barthii OBART01G08110 I 0.888
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.888
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.888
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.888
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.884
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.884
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.880
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.880
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.858
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.855
F775_05724 Aegilops tauschii F775_05724 I 0.853
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.846
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.837
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.820
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.817
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.813
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.811
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.796
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.795
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.793
Pm005124 Prunus mume Pm005124 I 0.793
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.793
MDP0000179225 Malus domestica MDP0000179225 I 0.791
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.790
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.788
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.788
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.785
MDP0000295807 Malus domestica MDP0000295807 I 0.783
Cla022565 Citrullus lanatus Cla022565 I 0.778
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.778
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.778
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.778
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.777
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.776
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.776
Cla023357 Citrullus lanatus Cla023357 I 0.776
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.776
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.775
mgf008601m Mimulus guttatus mgf008601m I 0.775
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.771
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.770
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.770
Ca_14925 Cicer arietinum Ca_14925 I 0.769
TCM_047091 Theobroma cacao TCM_047091 I 0.760
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.757
OPUNC12G06560 Oryza punctata OPUNC12G06560 N 0.753
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.753
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.752
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.750
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.750
Sb09g007370 Sorghum bicolor Sb09g007370 N 0.750
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.750
29794.m003447 Ricinus communis 29794.m003447 I 0.747
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.747
Bo1g010040 Brassica oleracea Bo1g010040 I 0.746
Bra011376 Brassica rapa Bra011376 I 0.746
Bo3g171130 Brassica oleracea Bo3g171130 I 0.745
Bra034531 Brassica rapa Bra034531 I 0.745
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.745
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.745
Bo7g115810 Brassica oleracea Bo7g115810 I 0.742
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.742
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.741
PK22174.1 Cannabis sativa PK22174.1 I 0.739
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.736
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.733
Ca_01884 Cicer arietinum Ca_01884 I 0.731
BRADI2G07677 Brachypodium distachyon BRADI2G07677 N 0.721
PK12011.1 Cannabis sativa PK12011.1 D 0.720
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.718
Bo9g171130 Brassica oleracea Bo9g171130 I 0.718
Bra008956 Brassica rapa Bra008956 I 0.718
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.718
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.718
Bo3g007070 Brassica oleracea Bo3g007070 I 0.712
Bo3g179620 Brassica oleracea Bo3g179620 I 0.712
Bra037045 Brassica rapa Bra037045 I 0.712
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.712
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.712
Bra006102 Brassica rapa Bra006102 I 0.710
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.708
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.701
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.701
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.697
OBART05G19200 Oryza barthii OBART05G19200 I 0.697
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.697
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.697
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.694
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.694
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.693
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.693
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.693
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.692
Si021484m.g Setaria italica Si021484m.g I 0.692
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.692
mgf006384m Mimulus guttatus mgf006384m I 0.691
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.689
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.689
MYB3R-2 Oryza sativa OS01G0841500 I 0.689
Si000842m.g Setaria italica Si000842m.g I 0.688
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.688
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.688
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.688
Cla018173 Citrullus lanatus Cla018173 I 0.687
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.687
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.685
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.684
OB05G26770 Oryza brachyantha OB05G26770 N 0.683
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.683
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.683
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.681
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.681
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.679
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.677
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.677
F775_10106 Aegilops tauschii F775_10106 I 0.676
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.675
ORUFI01G08920 Oryza rufipogon ORUFI01G08920 N 0.675
OS05G0459000 Oryza sativa OS05G0459000 I 0.675
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.675
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.674
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.673
Pm018007 Prunus mume Pm018007 I 0.673
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.673
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.673
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.671
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.671
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.669
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.669
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.669
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.669
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.667
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.667
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.665
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.665
Bo9g184660 Brassica oleracea Bo9g184660 I 0.664
Bra009597 Brassica rapa Bra009597 I 0.664
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.664
Pm002704 Prunus mume Pm002704 I 0.664
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.664
MDP0000219581 Malus domestica MDP0000219581 I 0.664
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.662
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.661