Bra009597 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra009597 T267819_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.809 0.900
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009597.1-P Myb 73 119
Bra009597.1-P Myb 125 171
Bra009597.1-P Myb 177 222

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g184660 Brassica oleracea Bo9g184660 I 0.861
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.821
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.820
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.820
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.820
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.809
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.809
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.780
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.773
Bra034067 Brassica rapa Bra034067 I 0.767
Bo1g144510 Brassica oleracea Bo1g144510 I 0.767
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.763
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.763
Pm002704 Prunus mume Pm002704 I 0.760
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.760
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.755
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.750
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.750
MYB3R-2 Oryza sativa OS01G0841500 I 0.750
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.750
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.750
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.747
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.747
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.743
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.741
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.741
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.741
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.740
TCM_021936 Theobroma cacao TCM_021936 I 0.740
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.739
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.738
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.738
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.738
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.738
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.738
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.738
29846.m000184 Ricinus communis 29846.m000184 I 0.735
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.735
Cla018173 Citrullus lanatus Cla018173 I 0.734
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.731
MDP0000219581 Malus domestica MDP0000219581 I 0.730
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.730
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.730
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.730
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.727
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.727
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.726
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.726
Si000842m.g Setaria italica Si000842m.g I 0.725
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.725
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.725
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.725
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.721
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.720
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.713
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.710
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.710
Bra029762 Brassica rapa Bra029762 I 0.700
mgf019610m Mimulus guttatus mgf019610m I 0.696
Bo5g139340 Brassica oleracea Bo5g139340 I 0.695
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.693
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.690
PK11664.1 Cannabis sativa PK11664.1 I 0.690
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.688
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.686
Cla023357 Citrullus lanatus Cla023357 I 0.686
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.685
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.685
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.685
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.682
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.680
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.679
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.679
OB01G45570 Oryza brachyantha OB01G45570 I 0.677
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.674
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.673
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.673
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.673
Cla022565 Citrullus lanatus Cla022565 I 0.673
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.671
MDP0000179225 Malus domestica MDP0000179225 I 0.671
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.671
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.670
Ca_14925 Cicer arietinum Ca_14925 I 0.669
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.668
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.668
Pm005124 Prunus mume Pm005124 I 0.667
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.666
OBART05G19200 Oryza barthii OBART05G19200 I 0.666
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.666
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.666
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.666
Si021484m.g Setaria italica Si021484m.g I 0.666
OB12G16480 Oryza brachyantha OB12G16480 I 0.664
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.664
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.664
OS12G0238000 Oryza sativa OS12G0238000 I 0.664
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.664
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.662
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.661