AMTR_s00012p00208260 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00012p00208260 T266152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.691 0.793
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.663 0.779
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN07858 Myb 60 106
ERN07858 Myb 112 158
ERN07858 Myb 164 209

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.760
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.760
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.753
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.752
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.752
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.746
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.746
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.743
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.743
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.742
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.740
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.739
Bo1g144510 Brassica oleracea Bo1g144510 I 0.738
Bra034067 Brassica rapa Bra034067 I 0.738
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.738
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.735
Pm002704 Prunus mume Pm002704 I 0.735
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.735
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.733
29846.m000184 Ricinus communis 29846.m000184 I 0.729
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.728
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.728
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.727
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.727
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.727
PK11664.1 Cannabis sativa PK11664.1 I 0.727
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.727
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.726
TCM_021936 Theobroma cacao TCM_021936 I 0.715
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.714
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.711
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.711
Bra001311 Brassica rapa Bra001311 N 0.708
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.708
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.708
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.705
MDP0000219581 Malus domestica MDP0000219581 I 0.704
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.700
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.700
MYB3R-2 Oryza sativa OS01G0841500 I 0.700
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.699
MDP0000295807 Malus domestica MDP0000295807 I 0.698
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.696
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.694
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.694
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.694
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.694
Si000842m.g Setaria italica Si000842m.g I 0.693
Cla023357 Citrullus lanatus Cla023357 I 0.693
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.693
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.693
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.693
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.693
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.693
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.692
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.691
Cla018173 Citrullus lanatus Cla018173 I 0.691
29794.m003447 Ricinus communis 29794.m003447 I 0.691
MDP0000179225 Malus domestica MDP0000179225 I 0.691
Bo5g139340 Brassica oleracea Bo5g139340 I 0.690
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.690
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.689
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.689
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.687
mgf019610m Mimulus guttatus mgf019610m I 0.686
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.685
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.684
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.683
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.682
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.682
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.680
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.680
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.680
Bra009597 Brassica rapa Bra009597 I 0.679
Bra029762 Brassica rapa Bra029762 I 0.679
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.679
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.678
TCM_047091 Theobroma cacao TCM_047091 I 0.678
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.678
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.677
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.676
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.676
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.676
Cla022565 Citrullus lanatus Cla022565 I 0.676
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.676
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.676
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.676
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.675
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.673
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.672
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.672
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.672
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.671
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.671
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.670
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.670
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.669
OBART05G19200 Oryza barthii OBART05G19200 I 0.669
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.669
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.669
Pm005124 Prunus mume Pm005124 I 0.664
PK22174.1 Cannabis sativa PK22174.1 I 0.664
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.663
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.663
PK12011.1 Cannabis sativa PK12011.1 D 0.663
Bo3g062020 Brassica oleracea Bo3g062020 N 0.662
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.662
Bo3g007070 Brassica oleracea Bo3g007070 I 0.661
Bo3g179620 Brassica oleracea Bo3g179620 I 0.661
Bra006102 Brassica rapa Bra006102 I 0.661
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.661
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.661
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.661