Bra029762 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029762 T268043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.728 0.871
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029762.1-P Myb 80 126
Bra029762.1-P Myb 132 178
Bra029762.1-P Myb 184 229

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g139340 Brassica oleracea Bo5g139340 I 0.898
Bo1g144510 Brassica oleracea Bo1g144510 I 0.821
Bra034067 Brassica rapa Bra034067 I 0.821
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.803
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.803
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.799
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.799
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.797
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.794
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.794
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.794
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.794
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.788
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.785
29846.m000184 Ricinus communis 29846.m000184 I 0.783
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.783
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.781
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.779
Si000842m.g Setaria italica Si000842m.g I 0.777
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.777
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.777
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.777
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.775
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.775
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.770
Pm002704 Prunus mume Pm002704 I 0.770
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.770
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.769
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.766
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.765
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.763
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.761
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.760
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.760
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.759
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.753
MDP0000219581 Malus domestica MDP0000219581 I 0.751
TCM_021936 Theobroma cacao TCM_021936 I 0.750
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.748
Bo3g062020 Brassica oleracea Bo3g062020 N 0.747
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.746
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.746
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.746
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.743
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.740
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.728
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.728
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.728
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.727
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.727
mgf019610m Mimulus guttatus mgf019610m I 0.724
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.716
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.713
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.713
MYB3R-2 Oryza sativa OS01G0841500 I 0.713
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.712
OB01G45570 Oryza brachyantha OB01G45570 I 0.711
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.710
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.710
Bra001311 Brassica rapa Bra001311 N 0.709
Cla018173 Citrullus lanatus Cla018173 I 0.706
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.702
Bra009597 Brassica rapa Bra009597 I 0.700
PK11664.1 Cannabis sativa PK11664.1 I 0.700
Bo9g184660 Brassica oleracea Bo9g184660 I 0.691
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.687
OB05G26770 Oryza brachyantha OB05G26770 N 0.680
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.679
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.674
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.673
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.671
F775_12121 Aegilops tauschii F775_12121 N 0.670
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.670
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.669
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.668