MTR_7g061330 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_7g061330 T274923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.771 0.879
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.690 0.779
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.676 0.779
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.669 0.729
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.669 0.729
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.661 0.743
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES79331 Myb 61 107
AES79331 Myb 113 159
AES79331 Myb 165 210
KEH22877 Myb 25 71
KEH22877 Myb 77 123
KEH22877 Myb 129 174

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.909
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.853
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.850
Pm002704 Prunus mume Pm002704 I 0.850
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.831
29846.m000184 Ricinus communis 29846.m000184 I 0.831
TCM_021936 Theobroma cacao TCM_021936 I 0.830
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.826
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.822
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.819
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.817
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.817
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.814
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.813
MDP0000219581 Malus domestica MDP0000219581 I 0.811
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.811
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.809
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.809
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.806
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.805
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.801
Cla018173 Citrullus lanatus Cla018173 I 0.799
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.797
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.794
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.794
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.794
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.791
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.789
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.787
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.786
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.780
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.780
MYB3R-2 Oryza sativa OS01G0841500 I 0.780
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.780
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.780
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.780
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.778
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.778
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.778
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.777
PK11664.1 Cannabis sativa PK11664.1 I 0.776
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.771
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.771
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.771
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.769
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.769
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.769
Bo1g144510 Brassica oleracea Bo1g144510 I 0.768
Bra034067 Brassica rapa Bra034067 I 0.768
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.766
Si000842m.g Setaria italica Si000842m.g I 0.766
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.766
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.765
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.765
mgf019610m Mimulus guttatus mgf019610m I 0.764
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.763
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.760
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.743
Bra009597 Brassica rapa Bra009597 I 0.738
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.733
Bo5g139340 Brassica oleracea Bo5g139340 I 0.728
Bo9g184660 Brassica oleracea Bo9g184660 I 0.728
Bra029762 Brassica rapa Bra029762 I 0.727
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.724
Ca_21127 Cicer arietinum Ca_21127 I 0.722
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.714
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.713
Cla022565 Citrullus lanatus Cla022565 I 0.713
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.713
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.713
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.713
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.711
TCM_047091 Theobroma cacao TCM_047091 I 0.711
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.711
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.709
Ca_14925 Cicer arietinum Ca_14925 I 0.707
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.706
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.705
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.700
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.699
29794.m003447 Ricinus communis 29794.m003447 I 0.698
Cla023357 Citrullus lanatus Cla023357 I 0.697
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.697
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.696
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.695
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.695
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.694
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.690
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.690
MDP0000179225 Malus domestica MDP0000179225 I 0.690
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.687
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.687
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.684
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.684
Si021484m.g Setaria italica Si021484m.g I 0.683
Bo1g010040 Brassica oleracea Bo1g010040 I 0.682
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.682
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.681
OBART05G19200 Oryza barthii OBART05G19200 I 0.681
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.681
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.681
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.681
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.681
Bo7g115810 Brassica oleracea Bo7g115810 I 0.680
OB01G45570 Oryza brachyantha OB01G45570 I 0.679
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.677
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.677
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.676
Bra011376 Brassica rapa Bra011376 I 0.676
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.676
Pm005124 Prunus mume Pm005124 I 0.676
PK12011.1 Cannabis sativa PK12011.1 D 0.676
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.673
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.673
MDP0000295807 Malus domestica MDP0000295807 I 0.671
mgf008601m Mimulus guttatus mgf008601m I 0.670
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.669
Bo3g062020 Brassica oleracea Bo3g062020 N 0.669
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.669
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.669
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.669
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.669
Bo3g171130 Brassica oleracea Bo3g171130 I 0.668
Bra034531 Brassica rapa Bra034531 I 0.668
F775_12121 Aegilops tauschii F775_12121 N 0.667
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.667
Bo9g171130 Brassica oleracea Bo9g171130 I 0.665
Bra008956 Brassica rapa Bra008956 I 0.665
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.665
Ca_01884 Cicer arietinum Ca_01884 I 0.665
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.664
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.664
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.664
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.663
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.661
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.661
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.661
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.661
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.661