Cucsa.175460 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.175460 T284450_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.772 0.850
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.714 0.771
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.697 0.757
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.691 0.729
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.691 0.729
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.662 0.721
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.175460.1 Myb 59 105
Cucsa.175460.1 Myb 111 157
Cucsa.175460.1 Myb 163 208
Cucsa.175460.2 Myb 59 105
Cucsa.175460.2 Myb 111 157
Cucsa.175460.2 Myb 163 208
Cucsa.175460.3 Myb 59 105
Cucsa.175460.3 Myb 111 157
Cucsa.175460.3 Myb 163 208
Cucsa.175460.4 Myb 59 105
Cucsa.175460.4 Myb 111 157
Cucsa.175460.4 Myb 163 208

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018173 Citrullus lanatus Cla018173 I 0.867
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.835
Pm002704 Prunus mume Pm002704 I 0.835
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.827
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.826
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.824
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.822
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.822
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.820
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.817
Si000842m.g Setaria italica Si000842m.g I 0.816
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.816
TCM_021936 Theobroma cacao TCM_021936 I 0.815
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.811
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.807
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.807
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.806
MDP0000219581 Malus domestica MDP0000219581 I 0.805
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.803
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.803
MYB3R-2 Oryza sativa OS01G0841500 I 0.803
29846.m000184 Ricinus communis 29846.m000184 I 0.803
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.802
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.800
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.800
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.798
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.796
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.795
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.794
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.794
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.790
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.790
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.790
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.789
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.787
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.783
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.782
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.782
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.779
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.777
Bo1g144510 Brassica oleracea Bo1g144510 I 0.773
Bra034067 Brassica rapa Bra034067 I 0.773
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.772
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.772
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.772
mgf019610m Mimulus guttatus mgf019610m I 0.772
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.767
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.767
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.763
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.763
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.763
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.761
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.761
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.760
PK11664.1 Cannabis sativa PK11664.1 I 0.758
Bra009597 Brassica rapa Bra009597 I 0.750
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.749
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.749
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.747
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.738
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.738
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.736
Si021484m.g Setaria italica Si021484m.g I 0.734
MDP0000179225 Malus domestica MDP0000179225 I 0.733
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.732
Ca_14925 Cicer arietinum Ca_14925 I 0.730
Bo9g184660 Brassica oleracea Bo9g184660 I 0.729
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.727
Cla023357 Citrullus lanatus Cla023357 I 0.725
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.725
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.725
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.724
OBART05G19200 Oryza barthii OBART05G19200 I 0.724
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.724
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.724
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.724
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.722
OB01G45570 Oryza brachyantha OB01G45570 I 0.721
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.718
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.718
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.718
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.718
Bo5g139340 Brassica oleracea Bo5g139340 I 0.717
Bra029762 Brassica rapa Bra029762 I 0.716
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.714
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.714
MDP0000295807 Malus domestica MDP0000295807 I 0.714
PK12011.1 Cannabis sativa PK12011.1 D 0.714
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.711
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.711
TCM_047091 Theobroma cacao TCM_047091 I 0.711
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.711
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.710
Cla022565 Citrullus lanatus Cla022565 I 0.709
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.709
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.709
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.709
Pm005124 Prunus mume Pm005124 I 0.707
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.706
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.705
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.705
Bo1g010040 Brassica oleracea Bo1g010040 I 0.704
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.702
OS05G0459000 Oryza sativa OS05G0459000 I 0.702
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.701
Bra011376 Brassica rapa Bra011376 I 0.699
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.697
29794.m003447 Ricinus communis 29794.m003447 I 0.697
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.695
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.695
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.694
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.693
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.692
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.692
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.691
Bo3g171130 Brassica oleracea Bo3g171130 I 0.691
Bra034531 Brassica rapa Bra034531 I 0.691
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.691
Ca_21127 Cicer arietinum Ca_21127 I 0.691
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.691
mgf008601m Mimulus guttatus mgf008601m I 0.690
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.689
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.688
OB12G16480 Oryza brachyantha OB12G16480 I 0.687
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.687
OS12G0238000 Oryza sativa OS12G0238000 I 0.687
OB05G26770 Oryza brachyantha OB05G26770 N 0.685
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.684
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.681
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.681
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.681
Bo7g115810 Brassica oleracea Bo7g115810 I 0.680
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.677
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.677
Ca_01884 Cicer arietinum Ca_01884 I 0.676
OB01G18340 Oryza brachyantha OB01G18340 I 0.675
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.673
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.673
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.668
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.668
Bra006102 Brassica rapa Bra006102 I 0.667
Bo3g007070 Brassica oleracea Bo3g007070 I 0.666
Bo3g179620 Brassica oleracea Bo3g179620 I 0.666
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.666
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.666
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.664
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.662
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.662
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.662
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.662
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.662
F775_12121 Aegilops tauschii F775_12121 N 0.661
PGSC0003DMG400003055 Solanum tuberosum PGSC0003DMG400003055 I 0.661
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.661