Eucgr.H02896 (Eucalyptus grandis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Eucgr.H02896 T286910_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.737 0.806
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.692 0.710
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.692 0.710
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.691 0.699
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.678 0.688
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.678 0.688
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.673 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.H02896.1 Myb 23 70
Eucgr.H02896.1 Myb 76 121

Links

Other Myb/SANT family TFs
Other Eucalyptus grandis TFs

591 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0000098101 Ascaris lumbricoides ALUE_0000098101 I
ALUE_0001653201 Ascaris lumbricoides ALUE_0001653201 I
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 I
BTMF_0001220301 Brugia timori BTMF_0001220301 N
DICVIV_03564 Dictyocaulus viviparus DICVIV_03564 N
EVEC_0000839201 Enterobius vermicularis EVEC_0000839201 N
Hba_09392 Heterorhabditis bacteriophora Hba_09392 N
KGM_02686 Danaus plexippus KGM_02686 I
LOAG_04282 Loa loa LOAG_04282 N
nAv.1.0.1.g09239 Acanthocheilonema viteae nAv.1.0.1.g09239 N
nLs.2.1.2.g02363 Litomosoides sigmodontis nLs.2.1.2.g02363 N
nOo.2.0.1.g04237 Onchocerca ochengi nOo.2.0.1.g04237 N
OFLC_0000380401 Onchocerca flexuosa OFLC_0000380401 I
OFLC_0001260801 Onchocerca flexuosa OFLC_0001260801 N
PEQ_0000701201 Parascaris equorum PEQ_0000701201 I
SNAPOd2T00016386001 Oikopleura dioica SNAPOd2T00016386001 I
SROB_0000822501 Schistosoma rodhaini SROB_0000822501 I
TCLT_0000479701 Thelazia callipaeda TCLT_0000479701 N
WBGene00247363 Onchocerca volvulus WBGene00247363 N
WUBG_03652 Wuchereria bancrofti WUBG_03652 N