gene12682-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene12682-v1.0-hybrid T287294_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.779 0.870
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.761 0.761
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.761 0.761
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.761 0.761
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.761 0.761
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.701 0.783
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.701 0.783
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.686 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna12682.1-v1.0-hybrid Myb 109 160

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF48 Bos taurus ENSBTAG00000031806 N
ENSBTAP00000028273-D1 Bos grunniens ENSBTAP00000028273-D1 N
ZNF48 Canis familiaris ENSCAFG00000029852 N
ZNF48 Callithrix jacchus ENSCJAG00000002611 I
ZNF48 Cavia porcellus ENSCPOG00000001104 N
ENSCSAG00000006039 Chlorocebus sabaeus ENSCSAG00000006039 N
Zfp553 Dipodomys ordii ENSDORG00000013148 N
ZNF48 Felis catus ENSFCAG00000028864 N
ZNF48 Homo sapiens ENSG00000180035 N
ZNF48 Loxodonta africana ENSLAFG00000008821 N
ZNF48 Macaca mulatta ENSMMUG00000029159 N
ENSMPUG00000012333 Mustela putorius furo ENSMPUG00000012333 N
Zfp553 Mus musculus ENSMUSG00000045598 N
ENSNLEG00000015834 Nomascus leucogenys ENSNLEG00000015834 N
ZNF48 Oryctolagus cuniculus ENSOCUG00000013651 N
ENSP00000417204 Macaca fascicularis ENSP00000417204 N
ENSPANG00000016527 Papio anubis ENSPANG00000016527 N
ZNF48 Procavia capensis ENSPCAG00000009103 N
ENSPPYG00000007271 Pongo abelii ENSPPYG00000007271 N
ZNF48 Pan troglodytes ENSPTRG00000007999 N
Znf48 Rattus norvegicus ENSRNOG00000017837 N
ZNF48 Sus scrofa ENSSSCG00000007801 N
ENSSTOG00000021915 Ictidomys tridecemlineatus ENSSTOG00000021915 N
ZNF48 Tursiops truncatus ENSTTRG00000017273 N
Myotis_brandtii_ZNF48_10014474 Myotis brandtii Myotis_brandtii_ZNF48_10014474 N