gene18416-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene18416-v1.0-hybrid T287330_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.797 0.850
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.706 0.757
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.689 0.743
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.686 0.714
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.686 0.714
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18416.1-v1.0-hybrid Myb 363 409
mrna18416.1-v1.0-hybrid Myb 415 461
mrna18416.1-v1.0-hybrid Myb 467 512

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMEM007577 Anopheles merus AMEM007577 N
L3MBTL1 Anolis carolinensis ENSACAG00000002143 N
ENSAMEG00000003728 Ailuropoda melanoleuca ENSAMEG00000003728 N
ENSAMXG00000008822 Astyanax mexicanus ENSAMXG00000008822 N
L3MBTL1 Canis familiaris ENSCAFG00000009291 N
L3MBTL1 Choloepus hoffmanni ENSCHOG00000005052 N
L3MBTL1 Callithrix jacchus ENSCJAG00000003964 N
MYT1L Callithrix jacchus ENSCJAG00000007286 N
ENSCSAG00000014035 Chlorocebus sabaeus ENSCSAG00000014035 N
l3mbtl1a Danio rerio ENSDARG00000014828 N
L3mbtl1 Dipodomys ordii ENSDORG00000002707 N
L3MBTL1 Equus caballus ENSECAG00000008175 N
L3MBTL1 Erinaceus europaeus ENSEEUG00000006232 N
ENSETEG00000013916 Echinops telfairi ENSETEG00000013916 N
L3MBTL1 Homo sapiens ENSG00000185513 N
MYT1L Homo sapiens ENSG00000186487 I
ENSGACG00000006074 Gasterosteus aculeatus ENSGACG00000006074 N
ENSGMOG00000006059 Gadus morhua ENSGMOG00000006059 N
L3MBTL1 Microcebus murinus ENSMICG00000015115 N
ENSMLUG00000016624 Myotis lucifugus ENSMLUG00000016624 N
MYT1L Macaca mulatta ENSMMUG00000009310 I
L3MBTL1 Monodelphis domestica ENSMODG00000003647 N
ENSMPUG00000017691 Mustela putorius furo ENSMPUG00000017691 N
L3mbtl1 Mus musculus ENSMUSG00000035576 N
ENSNLEG00000006529 Nomascus leucogenys ENSNLEG00000006529 N
L3MBTL1 Ornithorhynchus anatinus ENSOANG00000014344 N
ENSOARG00000003176 Ovis aries ENSOARG00000003176 N
L3MBTL1 Oryctolagus cuniculus ENSOCUG00000006662 N
L3MBTL1 Otolemur garnettii ENSOGAG00000014470 N
ENSONIG00000001923 Oreochromis niloticus ENSONIG00000001923 N
L3MBTL1 Ochotona princeps ENSOPRG00000002367 N
ENSORLG00000003513 Oryzias latipes ENSORLG00000003513 N
ENSP00000362227 Macaca fascicularis ENSP00000362227 N
ENSPANG00000026135 Papio anubis ENSPANG00000026135 N
L3MBTL1 Procavia capensis ENSPCAG00000013248 N
ENSPFOG00000022630 Poecilia formosa ENSPFOG00000022630 N
ENSPSIG00000016444 Pelodiscus sinensis ENSPSIG00000016444 N
L3MBTL1 Pan troglodytes ENSPTRG00000013507 N
L3MBTL1 Pteropus vampyrus ENSPVAG00000015234 N
L3mbtl1 Rattus norvegicus ENSRNOG00000007044 N
ENSSSCG00000007365 Sus scrofa ENSSSCG00000007365 N
ENSSTOG00000011672 Ictidomys tridecemlineatus ENSSTOG00000011672 N
ENSTNIG00000012014 Tetraodon nigroviridis ENSTNIG00000012014 N
ENSTSYG00000014180 Tarsius syrichta ENSTSYG00000014180 N
L3MBTL1 Tursiops truncatus ENSTTRG00000012844 N
ENSXMAG00000019188 Xiphophorus maculatus ENSXMAG00000019188 N
estExt_fgenesh2_pg.C_5980016 Branchiostoma floridae estExt_fgenesh2_pg.C_5980016 N
Myotis_brandtii_L3MBTL1_10025184 Myotis brandtii Myotis_brandtii_L3MBTL1_10025184 N
Ocbimv22028662m.g Octopus bimaculoides Ocbimv22028662m.g N
Ogr13959 Ophisaurus gracilis Ogr13959 N
SVUK_0001589601 Strongylus vulgaris SVUK_0001589601 N
TsM_000155300 Taenia solium TsM_000155300 N
l3mbtl1 Xenopus tropicalis XB-GENE-949999 N