Gorai.006G073500 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G073500 T287586_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.757 0.806
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.700 0.720
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.700 0.720
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.696 0.710
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.681 0.688
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.681 0.688
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.673 0.710
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.666 0.656
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.666 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G073500.1 Myb 22 69
Gorai.006G073500.1 Myb 75 120

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

600 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m014145 Ricinus communis 30170.m014145 I
BPC6 Arabidopsis thaliana AT5G42520 D
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Bra003405 Brassica rapa Bra003405 I
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I
Carubv10026720m.g Capsella rubella Carubv10026720m.g I
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I
Cucsa.159750 Cucumis sativus Cucsa.159750 I
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I
GLYMA04G02860 Glycine max GLYMA04G02860 I
GLYMA06G02880 Glycine max GLYMA06G02880 I
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I
Lus10012389.g Linum usitatissimum Lus10012389.g I
Lus10024313.g Linum usitatissimum Lus10024313.g I
MDP0000933138 Malus domestica MDP0000933138 I
MDP0000947167 Malus domestica MDP0000947167 I
MTR_1g023660 Medicago truncatula MTR_1g023660 I
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I
PK03443.1 Cannabis sativa PK03443.1 I
Pm006246 Prunus mume Pm006246 I
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I
TCM_034171 Theobroma cacao TCM_034171 I
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I