POPTR_0005s25720 (Populus trichocarpa)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 POPTR_0005s25720 T024712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.770 0.770
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s25720.1 BBR 1 335
POPTR_0005s25720.2 BBR 1 335
POPTR_0005s25720.3 BBR 1 335
POPTR_0005s25720.4 BBR 1 335

Links

Other BBR family TFs
Other Populus trichocarpa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.937
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.933
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.914
30170.m014145 Ricinus communis 30170.m014145 I 0.866
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.851
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.829
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.826
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.818
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.818
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.806
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.800
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.799
Pm006246 Prunus mume Pm006246 I 0.798
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.796
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.796
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.796
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.792
Cla022781 Citrullus lanatus Cla022781 I 0.789
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.788
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.784
TCM_034171 Theobroma cacao TCM_034171 I 0.777
MDP0000933138 Malus domestica MDP0000933138 I 0.776
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.772
BPC6 Arabidopsis thaliana AT5G42520 D 0.770
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.770
Bra003405 Brassica rapa Bra003405 I 0.767
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.766
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.766
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.760
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.758
MDP0000947167 Malus domestica MDP0000947167 I 0.757
PK03443.1 Cannabis sativa PK03443.1 I 0.755
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.744
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.742
Bo6g076850 Brassica oleracea Bo6g076850 I 0.729