CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo5g148420
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo5g148420
T292419_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC047
M07198_2.00
Arabidopsis thaliana
CACGB
VCGTG
Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a
0.945
0.939
NAC047
M07199_2.00
Arabidopsis thaliana
WNNNWYACGYMWYYN
NRRWKRCGTRWNNNW
Dap-seq
OMalley et al.(2016)
ANAC047_col
0.945
0.939
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g148420.1
NAC/NAM
11
139
PPGFRFHPTDEELILHYLRKKVSSLPVPLSVIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIVVPNVGVNEKIGIKKALVFYRGKPPKGVKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29950.m001173
Ricinus communis
29950.m001173
I
0.914
NAC047
Arabidopsis thaliana
AT3G04070
D
0.945
Bo1g152220
Brassica oleracea
Bo1g152220
I
0.947
Bostr.2570s0301
Boechera stricta
Bostr.2570s0301
I
0.957
Bra031949
Brassica rapa
Bra031949
I
0.950
Bra040152
Brassica rapa
Bra040152
I
0.947
Cagra.2026s0001
Capsella grandiflora
Cagra.2026s0001
I
0.954
Carubv10014000m.g
Capsella rubella
Carubv10014000m.g
I
0.954
cassava22631.valid.m1
Manihot esculenta
cassava22631.valid.m1
I
0.901
cassava35701.valid.m1
Manihot esculenta
cassava35701.valid.m1
I
0.902
Ciclev10020717m.g
Citrus clementina
Ciclev10020717m.g
I
0.918
anac047
Arabidopsis lyrata
fgenesh2_kg.3__367__AT3G04070.1
I
0.957
GLYMA12G22790
Glycine max
GLYMA12G22790
I
0.876
Gorai.007G267900
Gossypium raimondii
Gorai.007G267900
I
0.886
Gorai.013G191800
Gossypium raimondii
Gorai.013G191800
I
0.885
Lus10003269.g
Linum usitatissimum
Lus10003269.g
I
0.921
Lus10006547.g
Linum usitatissimum
Lus10006547.g
I
0.901
Lus10042531.g
Linum usitatissimum
Lus10042531.g
I
0.890
MDP0000674514
Malus domestica
MDP0000674514
I
0.874
orange1.1g017665m.g
Citrus sinensis
orange1.1g017665m.g
I
0.918
POPTR_0013s05080
Populus trichocarpa
POPTR_0013s05080
I
0.906
POPTR_0019s04690
Populus trichocarpa
POPTR_0019s04690
I
0.904
SapurV1A.0867s0160
Salix purpurea
SapurV1A.0867s0160
I
0.905
SapurV1A.1058s0080
Salix purpurea
SapurV1A.1058s0080
I
0.913
SapurV1A.1196s0040
Salix purpurea
SapurV1A.1196s0040
I
0.905
SapurV1A.2115s0010
Salix purpurea
SapurV1A.2115s0010
I
0.913
TCM_026030
Theobroma cacao
TCM_026030
I
0.888
Thhalv10021011m.g
Eutrema salsugineum
Thhalv10021011m.g
I
0.941
anac047
Vitis vinifera
VIT_08s0007g07670
I
0.884