POPTR_0002s06210 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0002s06210 T295218_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.900 0.754
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.900 0.754
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.900 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s06210.1 NAC/NAM 17 143
POPTR_0002s06210.2 NAC/NAM 17 143
POPTR_0002s06210.3 NAC/NAM 17 143
POPTR_0002s06210.4 NAC/NAM 17 143
POPTR_0002s06210.5 NAC/NAM 17 143

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0000041701 Anisakis simplex ASIM_0000041701 N
augustus_masked-nMf.1.1.scaf00383-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00383-processed-gene-0.1 I
BXY_0179600 Bursaphelenchus xylophilus BXY_0179600 I
CBG15006 Caenorhabditis briggsae CBG15006 I
CBN08571 Caenorhabditis brenneri CBN08571 I
CBN10811 Caenorhabditis brenneri CBN10811 I
CJA03362 Caenorhabditis japonica CJA03362 N
CRE09911 Caenorhabditis remanei CRE09911 I
CRE14116 Caenorhabditis remanei CRE14116 I
GPLIN_000686000 Globodera pallida GPLIN_000686000 N
HCOI00878400 Haemonchus contortus HCOI00878400 N
HCOI02063000 Haemonchus contortus HCOI02063000 N
HCOI02063200 Haemonchus contortus HCOI02063200 N
HCOI02063400 Haemonchus contortus HCOI02063400 N
HCOI02063800 Haemonchus contortus HCOI02063800 N
HCOI02064100 Haemonchus contortus HCOI02064100 N
L596_g25326 Steinernema carpocapsae L596_g25326 N
L889_g23169 Steinernema feltiae L889_g23169 N
L892_g27553 Steinernema scapterisci L892_g27553 N
L893_g2097 Steinernema glaseri L893_g2097 N
L898_g11980 Steinernema monticolum L898_g11980 N
Minc11986 Meloidogyne incognita Minc11986 I
PTRK_0000785300 Parastrongyloides trichosuri PTRK_0000785300 I
RSKR_0000862400 Rhabditophanes kr3021 RSKR_0000862400 N
SMUV_0001018601 Syphacia muris SMUV_0001018601 N
SPAL_0001690000 Strongyloides papillosus SPAL_0001690000 I
SSTP_0000433200 Strongyloides stercoralis SSTP_0000433200 I
SVE_0662100 Strongyloides venezuelensis SVE_0662100 I
TCNE_0000088101 Toxocara canis TCNE_0000088101 N
nhr-97 Caenorhabditis elegans WBGene00003687 N