CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_05913
(
Cicer arietinum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Ca_05913
T296471_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK11990.1
M01290_2.00
Cannabis sativa
DNAHDNHDNN
NNHDNHDTNH
PBM
Lambert et al.(2019)
pTH11336
0.980
0.798
anac075
M07223_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
ANAC075_col_a
0.976
0.904
PK27085.1
M01293_2.00
Cannabis sativa
AATTTATT
AATAAATT
PBM
Lambert et al.(2019)
pTH11262
0.976
0.912
NAC010
M07167_2.00
Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN
Dap-seq
OMalley et al.(2016)
SND3_colamp_a
0.901
0.702
NAC010
M07168_2.00
Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND3_col_b
0.901
0.702
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_05913
NAC/NAM
48
194
PAGVKFDPTDQELIEHLEAKVESKNNIKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDIQGNTGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHL
Links
Other
NAC/NAM
family TFs
Other
Cicer arietinum
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_6.327
Carica papaya
evm.TU.supercontig_6.327
N
0.000