CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10009087m.g *(Capsella rubella)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02365 (NAM)	IPR003441	Carubv10009087m.g	T297485_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NAC073 M07221_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYH	DRCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) SND2_col_a	0.933	0.609
NAC073 M07222_2.00	Arabidopsis thaliana	CKTSWNNNWYACGYW	WRCGTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND2_colamp_a	0.933	0.609
anac075 M07223_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYT	ARCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) ANAC075_col_a	0.930	0.582
NAC010 M07167_2.00	Arabidopsis thaliana	NWWNCTTSWNNNWYAMGHHWYH	DRWDDCKTRWNNNWSAAGNWWN	Dap-seq OMalley et al.(2016) SND3_colamp_a	0.929	0.564
NAC010 M07168_2.00	Arabidopsis thaliana	CKTSWNNNWYAMGYW	WRCKTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND3_col_b	0.929	0.564
PK27085.1 M01293_2.00	Cannabis sativa	AATTTATT	AATAAATT	PBM Lambert et al.(2019) pTH11262	0.929	0.582
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10009087m	NAC/NAM	59	192	PRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPGVKNDGTVSHFFHKAIKAYSTGTRKRRKIHDDDLGDVRWHKTGRTKPVVLDGVQRGCKKIMVLYGGKAVKTNWVMHQYHL

Links
Other NAC/NAM family TFs
Other *Capsella rubella* TFs