CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ba02443 *(Panicum virgatum)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02365 (NAM)	IPR003441	Pavir.Ba02443	T298770_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT3G12910 M07204_2.00	Arabidopsis thaliana	YGSCGKNDNDDHNMCGB	VCGKNDHHNHNMCGSCR	Dap-seq OMalley et al.(2016) AT3G12910_col_a	0.947	0.658
NAC002 M00970_2.00	Arabidopsis thaliana	NBACGYAWMN	NKWTRCGTVN	PBM Lindemose et al.(2014) ATAF1	0.920	0.518
NAC002 M07159_2.00	Arabidopsis thaliana	KVCGTRWNNNWHWHKNHHWYND	HNRWDDNMDWDWNNNWYACGBM	Dap-seq OMalley et al.(2016) ATAF1_col_a	0.920	0.518
NAC002 M07160_2.00	Arabidopsis thaliana	YACGY	RCGTR	Dap-seq OMalley et al.(2016) ATAF1_colamp_a	0.920	0.518
NAC48 M11084_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$NAC6_01	0.904	0.509
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ba02443.1.p	NAC/NAM	37	173	FPGFRFHPTDQELLSFYLARKVEKKGFSIGIIKEVDIYKHDPWDLPNEARHVVQGAGDKEDWYFFCLRGRKYRNSIRANRVTGSGFWKATGIDKPIHGSAGGDAGGECLGLKKSLVYYRGSAGRGTKTDWMMHEFRL

Links
Other NAC/NAM family TFs
Other *Panicum virgatum* TFs