CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT3G12910
(
Arabidopsis thaliana
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
AT3G12910
T292066_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.931
0.544
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.931
0.544
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.931
0.544
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.930
0.544
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.879
0.526
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.879
0.526
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G12910.1
NAC/NAM
22
150
LPGFRFHPTDEELVGYYLSKKVLLKKTSKIDEIVSQIDIYKFDPWDLPRSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDGSNKAVIGLKKTLVYYLGSAGKGNKTDWMMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis thaliana
TFs
234 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.995
Bra039353
Brassica rapa
Bra039353
I
0.995
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.995
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.995
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.994
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.994
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.994
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.990
Bra034719
Brassica rapa
Bra034719
I
0.990
Bo5g133050
Brassica oleracea
Bo5g133050
I
0.990
PGSC0003DMG400039898
Solanum tuberosum
PGSC0003DMG400039898
I
0.985
Cla023594
Citrullus lanatus
Cla023594
I
0.983
VIT_19s0027g00910
Vitis vinifera
VIT_19s0027g00910
I
0.980
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.978
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.977
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.977
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.974
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.974
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.973
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.972
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.971
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.971
MTR_2g068880
Medicago truncatula
MTR_2g068880
I
0.970
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.968
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.968
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.968
cassava39074.m1
Manihot esculenta
cassava39074.m1
I
0.965
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.965
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.965
TCM_029321
Theobroma cacao
TCM_029321
I
0.965
Cucsa.058780
Cucumis sativus
Cucsa.058780
I
0.963
GRMZM2G475014
Zea mays
GRMZM2G475014
I
0.961
Si022714m.g
Setaria italica
Si022714m.g
I
0.958
Ca_13571
Cicer arietinum
Ca_13571
I
0.956
Pavir.J31204
Panicum virgatum
Pavir.J31204
I
0.956
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.948
Pavir.Ba02443
Panicum virgatum
Pavir.Ba02443
I
0.947
mgf013201m
Mimulus guttatus
mgf013201m
I
0.946
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.946
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.943
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.942
Si022723m.g
Setaria italica
Si022723m.g
I
0.942
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.941
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.941
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.941
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.940
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.940
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.940
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.939
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.938
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.938
NAC026
Arabidopsis thaliana
AT1G62700
I
0.938
Si036303m.g
Setaria italica
Si036303m.g
I
0.938
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.937
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.936
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.935
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.935
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.935
PK26157.1
Cannabis sativa
PK26157.1
I
0.934
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.934
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.934
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.934
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.934
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.933
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.933
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.933
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.932
TCM_035160
Theobroma cacao
TCM_035160
I
0.932
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.931
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.931
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.931
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.931
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.931
Bra033239
Brassica rapa
Bra033239
I
0.931
NAC002
Arabidopsis thaliana
AT1G01720
D
0.931
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.930
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.930
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.930
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.930
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.930
NAC48
Oryza sativa
OS01G0884300
D
0.930
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.930
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.930
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.930
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.930
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.930
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.930
OBART01G39590
Oryza barthii
OBART01G39590
I
0.930
OB01G48340
Oryza brachyantha
OB01G48340
I
0.930
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.930
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.930
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.929
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.929
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.929
Si030752m.g
Setaria italica
Si030752m.g
I
0.929
Si002413m.g
Setaria italica
Si002413m.g
I
0.929
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.929
OS04G0691300
Oryza sativa
OS04G0691300
I
0.929
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.929
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.929
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.929
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.929
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.929
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.929
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.928
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.927
F775_28813
Aegilops tauschii
F775_28813
I
0.927
BRADI2G57100
Brachypodium distachyon
BRADI2G57100
I
0.927
TRIUR3_14109
Triticum urartu
TRIUR3_14109
I
0.927
TRAES3BF002300010CFD_g
Triticum aestivum
TRAES3BF002300010CFD_g
I
0.927
OB05G24820
Oryza brachyantha
OB05G24820
I
0.927
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.926
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.924
Solyc04g009440.2
Solanum lycopersicum
Solyc04g009440.2
I
0.924
BRADI2G03467
Brachypodium distachyon
BRADI2G03467
I
0.924
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.924
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.923
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.922
GSMUA_Achr6G18720_001
Musa acuminata
GSMUA_Achr6G18720_001
I
0.922
LPERR07G06440
Leersia perrieri
LPERR07G06440
I
0.922
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.922
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.921
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.921
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.921
OS05G0415400
Oryza sativa
OS05G0415400
I
0.921
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.921
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.921
OBART05G16540
Oryza barthii
OBART05G16540
I
0.921
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.921
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.921
SapurV1A.0311s0230
Salix purpurea
SapurV1A.0311s0230
I
0.917
POPTR_0005s07060
Populus trichocarpa
POPTR_0005s07060
I
0.917
Cla011742
Citrullus lanatus
Cla011742
I
0.916
mgf004020m
Mimulus guttatus
mgf004020m
I
0.915
SapurV1A.2021s0010
Salix purpurea
SapurV1A.2021s0010
I
0.914
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.913
PGSC0003DMG400009920
Solanum tuberosum
PGSC0003DMG400009920
I
0.912
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.911
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.911
POPTR_0007s04780
Populus trichocarpa
POPTR_0007s04780
I
0.911
Si032702m.g
Setaria italica
Si032702m.g
I
0.911
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.911
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.911
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.911
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.909
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.909
OB09G25590
Oryza brachyantha
OB09G25590
I
0.909
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.909
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.909
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.909
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.908
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.908
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.908
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.908
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.908
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.907
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.906
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.906
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.906
AMTR_s00017p00255350
Amborella trichopoda
AMTR_s00017p00255350
I
0.906
F775_13961
Aegilops tauschii
F775_13961
I
0.906
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.906
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.905
SapurV1A.0039s0530
Salix purpurea
SapurV1A.0039s0530
I
0.904
mgf015836m
Mimulus guttatus
mgf015836m
I
0.904
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.904
anac042
Vitis vinifera
VIT_12s0028g00860
I
0.904
Gorai.001G091900
Gossypium raimondii
Gorai.001G091900
I
0.903
ORUFI05G18190
Oryza rufipogon
ORUFI05G18190
I
0.901
mgf023960m
Mimulus guttatus
mgf023960m
I
0.899
Traes_7AL_74CC91D39
Triticum aestivum
Traes_7AL_74CC91D39
I
0.896
Pavir.J04049
Panicum virgatum
Pavir.J04049
I
0.896
cassava23439.valid.m1
Manihot esculenta
cassava23439.valid.m1
I
0.896
F775_20638
Aegilops tauschii
F775_20638
I
0.896
mgf002183m
Mimulus guttatus
mgf002183m
I
0.895
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.893
MLOC_37364
Hordeum vulgare
MLOC_37364
I
0.892
F775_11764
Aegilops tauschii
F775_11764
I
0.892
Traes_7DL_D05DA373C
Triticum aestivum
Traes_7DL_D05DA373C
I
0.892
TCM_029796
Theobroma cacao
TCM_029796
I
0.892
TRIUR3_29260
Triticum urartu
TRIUR3_29260
I
0.892
MLOC_13932
Hordeum vulgare
MLOC_13932
I
0.891
cassava4505.m1
Manihot esculenta
cassava4505.m1
I
0.891
OS08G0511200
Oryza sativa
OS08G0511200
I
0.890
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
0.890
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
0.890
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
0.890
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
0.889
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
0.889
Thhalv10017054m.g
Eutrema salsugineum
Thhalv10017054m.g
I
0.888
mgf002365m
Mimulus guttatus
mgf002365m
I
0.888
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.887
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
0.887
PGSC0003DMG400021119
Solanum tuberosum
PGSC0003DMG400021119
I
0.887
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.886
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.886
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.886
Bra029266
Brassica rapa
Bra029266
I
0.886
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.886
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.885
mgf019285m
Mimulus guttatus
mgf019285m
I
0.885
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
0.884
SapurV1A.0354s0230
Salix purpurea
SapurV1A.0354s0230
I
0.884
Gorai.009G357700
Gossypium raimondii
Gorai.009G357700
I
0.884
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.883
Solyc02g069960.2
Solanum lycopersicum
Solyc02g069960.2
I
0.883
POPTR_0005s10610
Populus trichocarpa
POPTR_0005s10610
I
0.883
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.882
Carubv10026697m.g
Capsella rubella
Carubv10026697m.g
I
0.882
Traes_7BL_8A5D12EE1
Triticum aestivum
Traes_7BL_8A5D12EE1
I
0.882
LPERR05G13140
Leersia perrieri
LPERR05G13140
I
0.881
Bra010077
Brassica rapa
Bra010077
I
0.880
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
0.880
VIT_19s0027g00870
Vitis vinifera
VIT_19s0027g00870
I
0.879
NAC101
Arabidopsis thaliana
AT5G62380
D
0.879
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.879
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.879
Bo9g014940
Brassica oleracea
Bo9g014940
I
0.879
PK05686.1
Cannabis sativa
PK05686.1
I
0.878
SELMODRAFT_71307
Selaginella moellendorffii
SELMODRAFT_71307
I
0.877
LPERR04G17350
Leersia perrieri
LPERR04G17350
I
0.877
SELMODRAFT_86855
Selaginella moellendorffii
SELMODRAFT_86855
I
0.877
ONIVA05G14200
Oryza nivara
ONIVA05G14200
I
0.876
SapurV1A.0958s0170
Salix purpurea
SapurV1A.0958s0170
I
0.873
VIT_19s0027g00880
Vitis vinifera
VIT_19s0027g00880
I
0.873
POPTR_0002s05820
Populus trichocarpa
POPTR_0002s05820
I
0.873
Cla013684
Citrullus lanatus
Cla013684
I
0.873
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
0.872
cassava27052.m1
Manihot esculenta
cassava27052.m1
I
0.871
F775_23543
Aegilops tauschii
F775_23543
I
0.871
TRAES3BF100600040CFD_g
Triticum aestivum
TRAES3BF100600040CFD_g
I
0.871
Bra035896
Brassica rapa
Bra035896
I
0.871
Gorai.002G036700
Gossypium raimondii
Gorai.002G036700
I
0.871
TRIUR3_18561
Triticum urartu
TRIUR3_18561
I
0.871