Bra035896 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra035896 T292685_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC101
M07241_2.00 		Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA		 Dap-seq
OMalley et al.(2016)
VND6_colamp_a 		0.995 0.982
NAC101
M07242_2.00 		Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND6_col_v31 		0.995 0.982
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.882 0.570
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.882 0.570
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.882 0.570
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.871 0.518
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035896.1-P NAC/NAM 8 135

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC101 Arabidopsis thaliana AT5G62380 D 0.995
VND6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001814 I 0.995
Bostr.0568s0569 Boechera stricta Bostr.0568s0569 I 0.995
Cagra.4003s0027 Capsella grandiflora Cagra.4003s0027 I 0.995
Carubv10026697m.g Capsella rubella Carubv10026697m.g I 0.995
Bo2g164090 Brassica oleracea Bo2g164090 I 0.994
Bo3g107700 Brassica oleracea Bo3g107700 I 0.994
Bra010077 Brassica rapa Bra010077 I 0.994
Bra029266 Brassica rapa Bra029266 I 0.994
Thhalv10004488m.g Eutrema salsugineum Thhalv10004488m.g I 0.994
Bo9g014940 Brassica oleracea Bo9g014940 I 0.993
NAC026 Arabidopsis thaliana AT1G62700 I 0.981
Cla011742 Citrullus lanatus Cla011742 I 0.981
mgf002365m Mimulus guttatus mgf002365m I 0.981
Thhalv10023502m.g Eutrema salsugineum Thhalv10023502m.g I 0.981
Si022723m.g Setaria italica Si022723m.g I 0.935
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.933
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.930
Si036303m.g Setaria italica Si036303m.g I 0.928
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.927
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I 0.924
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.919
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I 0.919
mgf004020m Mimulus guttatus mgf004020m I 0.918
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.914
MDP0000285555 Malus domestica MDP0000285555 I 0.914
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.912
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.912
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.911
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.910
mgf019285m Mimulus guttatus mgf019285m I 0.910
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.910
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.909
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.908
F775_13961 Aegilops tauschii F775_13961 I 0.906
Si022714m.g Setaria italica Si022714m.g I 0.904
F775_30297 Aegilops tauschii F775_30297 I 0.903
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I 0.903
TRIUR3_29250 Triticum urartu TRIUR3_29250 I 0.903
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.901
MTR_2g068920 Medicago truncatula MTR_2g068920 I 0.901
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.901
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.901
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.901
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.901
Bra034719 Brassica rapa Bra034719 I 0.899
LPERR12G01440 Leersia perrieri LPERR12G01440 I 0.899
MTR_2g068880 Medicago truncatula MTR_2g068880 I 0.899
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.899
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.898
OMERI04G25730 Oryza meridionalis OMERI04G25730 I 0.898
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.897
Ca_13571 Cicer arietinum Ca_13571 I 0.897
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.896
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.895
PK26157.1 Cannabis sativa PK26157.1 I 0.895
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.894
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.894
LPERR11G01300 Leersia perrieri LPERR11G01300 I 0.894
OBART05G16540 Oryza barthii OBART05G16540 I 0.894
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.894
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.894
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.894
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.894
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.894
OS05G0415400 Oryza sativa OS05G0415400 I 0.894
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.894
Cagra.27691s0001 Capsella grandiflora Cagra.27691s0001 I 0.894
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.893
Pavir.Ba01386 Panicum virgatum Pavir.Ba01386 I 0.893
Pavir.Bb02626 Panicum virgatum Pavir.Bb02626 I 0.893
Si032702m.g Setaria italica Si032702m.g I 0.892
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.892
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.891
OB09G25590 Oryza brachyantha OB09G25590 I 0.891
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.891
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.891
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.891
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.891
TCM_035160 Theobroma cacao TCM_035160 I 0.891
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.891
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.891
anac032 Vitis vinifera VIT_18s0001g02300 I 0.889
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.889
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.889
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.889
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.888
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.888
mgf015836m Mimulus guttatus mgf015836m I 0.888
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.888
MDP0000206868 Malus domestica MDP0000206868 I 0.888
GLYMA12G00760 Glycine max GLYMA12G00760 I 0.887
OPUNC04G28220 Oryza punctata OPUNC04G28220 I 0.886
mgf013201m Mimulus guttatus mgf013201m I 0.886
gene21248-v1.0-hybrid Fragaria vesca gene21248-v1.0-hybrid I 0.886
SapurV1A.0129s0210 Salix purpurea SapurV1A.0129s0210 I 0.886
Sb07g005610 Sorghum bicolor Sb07g005610 I 0.885
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.885
30147.m014211 Ricinus communis 30147.m014211 I 0.885
POPTR_0012s14660 Populus trichocarpa POPTR_0012s14660 I 0.884
PRUPE_ppa020139mg Prunus persica PRUPE_ppa020139mg I 0.884
VIT_16s0022g00690 Vitis vinifera VIT_16s0022g00690 I 0.884
Pm019488 Prunus mume Pm019488 I 0.884
Pm019490 Prunus mume Pm019490 I 0.884
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.884
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I 0.884
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.883
NAC002 Arabidopsis thaliana AT1G01720 D 0.882
Bo5g001100 Brassica oleracea Bo5g001100 I 0.882
Bra033239 Brassica rapa Bra033239 I 0.882
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.882
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.882
POPTR_0015s14770 Populus trichocarpa POPTR_0015s14770 I 0.882
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.882
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.882
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.882
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.882
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.882
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.881
TCM_029321 Theobroma cacao TCM_029321 I 0.881
cassava47039.m1 Manihot esculenta cassava47039.m1 I 0.881
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.880
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.880
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.880
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.880
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.880
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.880
OS04G0691300 Oryza sativa OS04G0691300 I 0.880
TCM_014939 Theobroma cacao TCM_014939 I 0.880
Cla023594 Citrullus lanatus Cla023594 I 0.880
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.880
Ciclev10006988m.g Citrus clementina Ciclev10006988m.g I 0.880
Eucgr.A02887 Eucalyptus grandis Eucgr.A02887 I 0.880
Gorai.001G048200 Gossypium raimondii Gorai.001G048200 I 0.880
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.880
F775_20638 Aegilops tauschii F775_20638 I 0.879
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.879
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.879
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.879
mgf021916m Mimulus guttatus mgf021916m I 0.878
orange1.1g018596m.g Citrus sinensis orange1.1g018596m.g I 0.878
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.877
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.877
PGSC0003DMG400021576 Solanum tuberosum PGSC0003DMG400021576 I 0.876
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.876
Solyc06g034340.1 Solanum lycopersicum Solyc06g034340.1 I 0.876
VIT_02s0154g00020 Vitis vinifera VIT_02s0154g00020 I 0.876
Cla006372 Citrullus lanatus Cla006372 I 0.876
Cucsa.251620 Cucumis sativus Cucsa.251620 I 0.876
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.876
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.876
GRMZM2G167018 Zea mays GRMZM2G167018 I 0.875
POPTR_0001s00220 Populus trichocarpa POPTR_0001s00220 I 0.875
POPTR_0003s11250 Populus trichocarpa POPTR_0003s11250 I 0.875
TCM_016035 Theobroma cacao TCM_016035 I 0.875
28200.m000189 Ricinus communis 28200.m000189 I 0.875
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.875
SapurV1A.1275s0070 Salix purpurea SapurV1A.1275s0070 I 0.875
BGIOSGA027623 Oryza indica BGIOSGA027623 I 0.874
ONIVA08G03440 Oryza nivara ONIVA08G03440 I 0.874
ORUFI08G03870 Oryza rufipogon ORUFI08G03870 I 0.874
OS08G0157900 Oryza sativa OS08G0157900 I 0.874
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.874
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.874
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.874
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.874
Bo3g065200 Brassica oleracea Bo3g065200 I 0.873
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.873
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.873
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.873
cassava46384.m1 Manihot esculenta cassava46384.m1 I 0.873
Bo1g138800 Brassica oleracea Bo1g138800 I 0.872
Bra039353 Brassica rapa Bra039353 I 0.872
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.871
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.871
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.871
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.871
Bo9g036910 Brassica oleracea Bo9g036910 I 0.027