Bra034719 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra034719 T292680_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.990 0.852
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.940 0.565
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.940 0.565
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.940 0.565
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.933 0.548
NAC101
M07241_2.00 		Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA		 Dap-seq
OMalley et al.(2016)
VND6_colamp_a 		0.906 0.530
NAC101
M07242_2.00 		Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND6_col_v31 		0.906 0.530
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034719.1-P NAC/NAM 25 172

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.990
Bo1g138800 Brassica oleracea Bo1g138800 I 0.990
Bra039353 Brassica rapa Bra039353 I 0.990
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.990
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.990
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.989
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.989
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.988
Bo5g133050 Brassica oleracea Bo5g133050 I 0.986
Bo3g065200 Brassica oleracea Bo3g065200 I 0.982
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.981
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.979
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.979
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.979
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.978
Cla023594 Citrullus lanatus Cla023594 I 0.976
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.975
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.974
TCM_029321 Theobroma cacao TCM_029321 I 0.973
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.972
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.972
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.971
MTR_2g068920 Medicago truncatula MTR_2g068920 I 0.970
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.968
MTR_2g068880 Medicago truncatula MTR_2g068880 I 0.968
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.968
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.968
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.967
Pavir.Cb00167 Panicum virgatum Pavir.Cb00167 I 0.963
Si022714m.g Setaria italica Si022714m.g I 0.960
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.957
Ca_13571 Cicer arietinum Ca_13571 I 0.954
GRMZM2G475014 Zea mays GRMZM2G475014 I 0.953
Cucsa.058780 Cucumis sativus Cucsa.058780 I 0.951
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.951
Pavir.J31204 Panicum virgatum Pavir.J31204 I 0.947
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.946
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.945
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.945
Pavir.Ba02443 Panicum virgatum Pavir.Ba02443 I 0.945
GRMZM2G079632 Zea mays GRMZM2G079632 I 0.944
GRMZM2G162739 Zea mays GRMZM2G162739 I 0.944
Sb02g006680 Sorghum bicolor Sb02g006680 I 0.944
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I 0.944
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.944
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.944
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.944
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.943
Si036303m.g Setaria italica Si036303m.g I 0.942
TCM_035160 Theobroma cacao TCM_035160 I 0.942
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.942
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.942
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.942
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.942
Si030752m.g Setaria italica Si030752m.g I 0.941
anac032 Vitis vinifera VIT_18s0001g02300 I 0.941
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.941
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.941
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.941
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.941
PK26157.1 Cannabis sativa PK26157.1 I 0.941
NAC002 Arabidopsis thaliana AT1G01720 D 0.940
Bo5g001100 Brassica oleracea Bo5g001100 I 0.940
Bra033239 Brassica rapa Bra033239 I 0.940
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.940
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.940
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.940
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.940
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.939
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.939
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.938
mgf013201m Mimulus guttatus mgf013201m I 0.938
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.937
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.937
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.937
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.936
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.936
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.934
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I 0.934
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.933
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.933
OB01G48340 Oryza brachyantha OB01G48340 I 0.933
OBART01G39590 Oryza barthii OBART01G39590 I 0.933
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.933
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.933
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.933
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.933
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.933
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.933
NAC48 Oryza sativa OS01G0884300 D 0.933
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.933
Si022723m.g Setaria italica Si022723m.g I 0.933
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.933
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.932
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.932
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I 0.932
F775_28813 Aegilops tauschii F775_28813 I 0.932
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.932
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.932
OBART05G16540 Oryza barthii OBART05G16540 I 0.932
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.932
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.932
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.932
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.932
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.932
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.932
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.932
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.932
OS05G0415400 Oryza sativa OS05G0415400 I 0.932
Si002413m.g Setaria italica Si002413m.g I 0.932
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I 0.932
TRIUR3_14109 Triticum urartu TRIUR3_14109 I 0.932
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I 0.932
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.931
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.931
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I 0.930
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.930
OB05G24820 Oryza brachyantha OB05G24820 I 0.930
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I 0.928
mgf004020m Mimulus guttatus mgf004020m I 0.925
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I 0.924
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I 0.924
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.921
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I 0.921
NAC026 Arabidopsis thaliana AT1G62700 I 0.918
OMERI04G25730 Oryza meridionalis OMERI04G25730 I 0.918
OPUNC04G28220 Oryza punctata OPUNC04G28220 I 0.918
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I 0.918
mgf002365m Mimulus guttatus mgf002365m I 0.918
Thhalv10023502m.g Eutrema salsugineum Thhalv10023502m.g I 0.918
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I 0.916
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.915
Cla011742 Citrullus lanatus Cla011742 I 0.915
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.915
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.914
SapurV1A.0039s0530 Salix purpurea SapurV1A.0039s0530 I 0.912
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.911
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.911
Pavir.Ba01386 Panicum virgatum Pavir.Ba01386 I 0.911
Pavir.Bb02626 Panicum virgatum Pavir.Bb02626 I 0.911
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.910
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.910
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.910
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.910
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.910
OS04G0691300 Oryza sativa OS04G0691300 I 0.910
Si032702m.g Setaria italica Si032702m.g I 0.910
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.909
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.909
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.908
OB09G25590 Oryza brachyantha OB09G25590 I 0.908
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.908
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.908
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.908
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.908
mgf002183m Mimulus guttatus mgf002183m I 0.908
Cagra.4003s0027 Capsella grandiflora Cagra.4003s0027 I 0.908
Carubv10026697m.g Capsella rubella Carubv10026697m.g I 0.908
Bo2g164090 Brassica oleracea Bo2g164090 I 0.907
Bo3g107700 Brassica oleracea Bo3g107700 I 0.907
Bra029266 Brassica rapa Bra029266 I 0.907
F775_20638 Aegilops tauschii F775_20638 I 0.907
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.907
Thhalv10004488m.g Eutrema salsugineum Thhalv10004488m.g I 0.907
AMTR_s00017p00255350 Amborella trichopoda AMTR_s00017p00255350 I 0.906
NAC101 Arabidopsis thaliana AT5G62380 D 0.906
VND6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001814 I 0.906
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.906
Bostr.0568s0569 Boechera stricta Bostr.0568s0569 I 0.906
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.906
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.906
ORUFI05G18190 Oryza rufipogon ORUFI05G18190 I 0.905
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.905
F775_13961 Aegilops tauschii F775_13961 I 0.903
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.903
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.903
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.903
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.903
Bra010077 Brassica rapa Bra010077 I 0.902
TCM_029796 Theobroma cacao TCM_029796 I 0.900
Pavir.J04049 Panicum virgatum Pavir.J04049 I 0.900
Bra035896 Brassica rapa Bra035896 I 0.899
Cucsa.118320 Cucumis sativus Cucsa.118320 I 0.897
mgf015836m Mimulus guttatus mgf015836m I 0.897
F775_11764 Aegilops tauschii F775_11764 I 0.896
LPERR05G13140 Leersia perrieri LPERR05G13140 I 0.896
MLOC_37364 Hordeum vulgare MLOC_37364 I 0.896
Traes_7DL_D05DA373C Triticum aestivum Traes_7DL_D05DA373C I 0.896
TRIUR3_29260 Triticum urartu TRIUR3_29260 I 0.896
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I 0.896
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I 0.896
cassava4505.m1 Manihot esculenta cassava4505.m1 I 0.893
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.891
cassava23439.valid.m1 Manihot esculenta cassava23439.valid.m1 I 0.891
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I 0.890
Pm014764 Prunus mume Pm014764 I 0.889
LPERR12G01440 Leersia perrieri LPERR12G01440 I 0.887
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.886
mgf019285m Mimulus guttatus mgf019285m I 0.886
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.885
Bo9g014940 Brassica oleracea Bo9g014940 I 0.885
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I 0.884
Traes_7BL_8A5D12EE1 Triticum aestivum Traes_7BL_8A5D12EE1 I 0.884
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.883
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.883
TCM_020127 Theobroma cacao TCM_020127 N 0.883
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.882
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.882
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.882
OS08G0511200 Oryza sativa OS08G0511200 I 0.882
TCM_020121 Theobroma cacao TCM_020121 I 0.882
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.881
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.881
TCM_020125 Theobroma cacao TCM_020125 I 0.880
Sb02g026510 Sorghum bicolor Sb02g026510 I 0.879
Cla013684 Citrullus lanatus Cla013684 I 0.879
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.878
LPERR11G01300 Leersia perrieri LPERR11G01300 I 0.878
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.878
VIT_19s0027g00880 Vitis vinifera VIT_19s0027g00880 I 0.878
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.878
Gorai.013G085000 Gossypium raimondii Gorai.013G085000 I 0.877
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.876
F775_00272 Aegilops tauschii F775_00272 I 0.876
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.876
POPTR_0005s10610 Populus trichocarpa POPTR_0005s10610 I 0.873
TCM_001955 Theobroma cacao TCM_001955 I 0.873
cassava21730.m1 Manihot esculenta cassava21730.m1 I 0.873
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I 0.871
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I 0.871