POPTR_0005s10610 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0005s10610 T295252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.883 0.487
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.882 0.513
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.882 0.513
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.882 0.513
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s10610.1 NAC/NAM 6 129

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0958s0170 Salix purpurea SapurV1A.0958s0170 I 0.990
cassava23439.valid.m1 Manihot esculenta cassava23439.valid.m1 I 0.987
Cla007018 Citrullus lanatus Cla007018 N 0.983
Cucsa.119310 Cucumis sativus Cucsa.119310 N 0.980
Bra037283 Brassica rapa Bra037283 N 0.965
Bo9g024360 Brassica oleracea Bo9g024360 N 0.964
TRIUR3_18561 Triticum urartu TRIUR3_18561 I 0.940
PK05686.1 Cannabis sativa PK05686.1 I 0.937
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.934
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.931
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.930
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.930
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.928
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.917
Bo3g065200 Brassica oleracea Bo3g065200 I 0.913
Cla023594 Citrullus lanatus Cla023594 I 0.909
TCM_029321 Theobroma cacao TCM_029321 I 0.905
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.904
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.901
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.896
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.895
VIT_04s0008g00150 Vitis vinifera VIT_04s0008g00150 N 0.894
Pavir.Cb00167 Panicum virgatum Pavir.Cb00167 I 0.894
OMERI04G25730 Oryza meridionalis OMERI04G25730 I 0.893
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.891
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.891
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.888
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.888
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.888
Gorai.008G038800 Gossypium raimondii Gorai.008G038800 N 0.888
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.887
Si022714m.g Setaria italica Si022714m.g I 0.885
Pavir.J31204 Panicum virgatum Pavir.J31204 I 0.885
Bo1g138800 Brassica oleracea Bo1g138800 I 0.884
Bra039353 Brassica rapa Bra039353 I 0.884
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.884
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.883
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.883
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.883
NAC002 Arabidopsis thaliana AT1G01720 D 0.882
Bo5g001100 Brassica oleracea Bo5g001100 I 0.882
Bra033239 Brassica rapa Bra033239 I 0.882
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.882
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.882
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.882
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.881
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N 0.881
Si036303m.g Setaria italica Si036303m.g I 0.881
Pm020961 Prunus mume Pm020961 N 0.881
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.881
Gorai.003G003900 Gossypium raimondii Gorai.003G003900 N 0.881
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.880
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.879
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.878
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.878
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.878
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.878
MDP0000480581 Malus domestica MDP0000480581 N 0.876
MDP0000868556 Malus domestica MDP0000868556 N 0.876
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.875
Cucsa.058780 Cucumis sativus Cucsa.058780 I 0.874
evm.TU.supercontig_320.2 Carica papaya evm.TU.supercontig_320.2 N 0.874
Bra034719 Brassica rapa Bra034719 I 0.873
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.873
TCM_035160 Theobroma cacao TCM_035160 I 0.873
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.873
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.872
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.872
Si022723m.g Setaria italica Si022723m.g I 0.871
chr3.CM0460.350.nd Lotus japonicus chr3.CM0460.350.nd N 0.871