Pavir.Fa00048 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Fa00048 T298840_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.902 0.763
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.902 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00048.1.p NAC/NAM 26 152

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N 0.000
Cucsa.365230 Cucumis sativus Cucsa.365230 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000