THRB (Procavia capensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSPCAG00000012625 T304404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.967 0.896
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.967 0.896
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.967 0.896
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.967 0.896
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.967 0.896
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.967 0.896
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.967 0.896
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.967 0.896
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.967 0.896
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.967 0.896
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.967 0.896
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.967 0.896
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.967 0.896
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.937 0.761
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.931 0.776
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.931 0.776
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.931 0.776
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.931 0.776
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.931 0.776
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.822 0.567
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.777 0.537
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000011811 Nuclear receptor 120 187

Links

Other Nuclear receptor family TFs
Other Procavia capensis TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB006415 Anopheles albimanus AALB006415 I
AARA010616 Anopheles arabiensis AARA010616 I
AATE016215 Anopheles atroparvus AATE016215 I
ACEP19638 Atta cephalotes ACEP19638 I
ACUA004409 Anopheles culicifacies ACUA004409 I
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I
ADAC003252 Anopheles darlingi ADAC003252 I
AFAF011136 Anopheles farauti AFAF011136 I
AGAP000281 Anopheles gambiae AGAP000281 I
AMEC012857 Anopheles melas AMEC012857 I
AMEM006878 Anopheles merus AMEM006878 I
ASIS016667 Anopheles sinensis ASIS016667 I
ASTEI07799 Anopheles stephensi ASTEI07799 I
BGIBMGA006848 Bombyx mori BGIBMGA006848 I
Bm4188 Brugia malayi Bm4188 N
Cflo_00230--XP_624018.2_APIME Camponotus floridanus Cflo_00230--XP_624018.2_APIME N
CGI_10017717 Crassostrea gigas CGI_10017717 I
CLEC001918 Cimex lectularius CLEC001918 I
D918_09264 Trichuris suis D918_09264 N
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N
tox2 Gasterosteus aculeatus ENSGACG00000006914 N
tox4a Gasterosteus aculeatus ENSGACG00000014107 I
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N
tox2 Oryzias latipes ENSORLG00000004818 N
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N
tox2 Takifugu rubripes ENSTRUG00000013848 N
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N
GB43084 Apis mellifera GB43084 I
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N
HelroG145107 Helobdella robusta HelroG145107 N
HHAL000823-PA Halyomorpha halys HHAL000823-PA I
HMEL005034 Heliconius melpomene HMEL005034 I
ISCW015985 Ixodes scapularis ISCW015985 N
ISCW018867 Ixodes scapularis ISCW018867 I
KGM_14572 Danaus plexippus KGM_14572 I
LCUP006200 Lucilia cuprina LCUP006200 N
LOAG_18151 Loa loa LOAG_18151 N
LotgiG109021 Lottia gigantea LotgiG109021 I
MCINX005468 Melitaea cinxia MCINX005468 I
MDOA008605 Musca domestica MDOA008605 N
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N
nRc.2.0.1.g21669 Romanomermis culicivorax nRc.2.0.1.g21669 N
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N
NV10488 Nasonia vitripennis NV10488 I
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N
RO3G_05222 Rhizopus oryzae RO3G_05222 N
RPRC000650 Rhodnius prolixus RPRC000650 I
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N
TC012723 Tribolium castaneum TC012723 I
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I
WBGene00236865 Onchocerca volvulus WBGene00236865 N
WUBG_03914 Wuchereria bancrofti WUBG_03914 N
XP_002936155 Xenopus tropicalis XP_002936155 N