GA18413 (Drosophila pseudoobscura)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 FBgn0078415 T305300_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.987 0.986
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.987 0.986
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.987 0.986
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.985 0.943
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.979 0.843
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.979 0.843
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.979 0.843
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.979 0.843
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.979 0.843
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.979 0.843
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.979 0.843
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.964 0.829
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.964 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0286049 Nuclear receptor 12 82

Links

Other Nuclear receptor family TFs
Other Drosophila pseudoobscura TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00067720 Amborella trichopoda AMTR_s00004p00067720 N
BGIOSGA010118 Oryza indica BGIOSGA010118 N
BRADI1G13207 Brachypodium distachyon BRADI1G13207 N
cassava10020.m1 Manihot esculenta cassava10020.m1 N
Ciclev10017173m.g Citrus clementina Ciclev10017173m.g N
Eucgr.J01756 Eucalyptus grandis Eucgr.J01756 N
F775_42487 Aegilops tauschii F775_42487 N
gene01596-v1.0-hybrid Fragaria vesca gene01596-v1.0-hybrid N
GRMZM2G149219 Zea mays GRMZM2G149219 N
GRMZM2G161411 Zea mays GRMZM2G161411 N
GSMUA_Achr3G30880_001 Musa acuminata GSMUA_Achr3G30880_001 N
LPERR03G23380 Leersia perrieri LPERR03G23380 N
MLOC_16746 Hordeum vulgare MLOC_16746 N
MLOC_19031 Hordeum vulgare MLOC_19031 I
OB03G35830 Oryza brachyantha OB03G35830 N
OBART03G28190 Oryza barthii OBART03G28190 N
OGLUM03G28820 Oryza glumaepatula OGLUM03G28820 N
OMERI03G24810 Oryza meridionalis OMERI03G24810 N
OPUNC03G25700 Oryza punctata OPUNC03G25700 N
orange1.1g032690m.g Citrus sinensis orange1.1g032690m.g N
ORGLA03G0260500 Oryza glaberrima ORGLA03G0260500 N
ORUFI03G29320 Oryza rufipogon ORUFI03G29320 N
OS03G0657400 Oryza sativa OS03G0657400 N
Pavir.J22786 Panicum virgatum Pavir.J22786 N
POPTR_0001s03970 Populus trichocarpa POPTR_0001s03970 N
POPTR_0003s20860 Populus trichocarpa POPTR_0003s20860 N
SapurV1A.0081s0610 Salix purpurea SapurV1A.0081s0610 N
Sb01g012870 Sorghum bicolor Sb01g012870 N
Si038001m.g Setaria italica Si038001m.g N
Si038955m.g Setaria italica Si038955m.g N
TRAES3BF090100100CFD_g Triticum aestivum TRAES3BF090100100CFD_g I
Traes_3AL_3160E1F30 Triticum aestivum Traes_3AL_3160E1F30 I
Traes_4AL_234E1CDF6 Triticum aestivum Traes_4AL_234E1CDF6 N
Traes_4DS_CFC487CE5 Triticum aestivum Traes_4DS_CFC487CE5 N
TRIUR3_13881 Triticum urartu TRIUR3_13881 N
TRIUR3_34281 Triticum urartu TRIUR3_34281 I