knrl (Drosophila melanogaster)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 FBgn0001323 T305272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
knrl
M03930_2.00		 Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1		 (Direct) (Direct)
knrl
M03931_2.00		 Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2		 (Direct) (Direct)
knrl
M06422_2.00		 Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.987 0.957
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.981 0.857
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.981 0.857
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.981 0.857
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.981 0.857
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.981 0.857
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.981 0.857
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.981 0.857
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.965 0.829
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.965 0.829
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0077870 Nuclear receptor 12 82
FBpp0312390 Nuclear receptor 12 82

Links

Other Nuclear receptor family TFs
Other Drosophila melanogaster TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GF24122 Drosophila ananassae FBgn0101116 I 0.988
GG13294 Drosophila erecta FBgn0105566 I 0.988
GH16982 Drosophila grimshawi FBgn0124453 I 0.988
GI11900 Drosophila mojavensis FBgn0134658 I 0.988
GM22199 Drosophila sechellia FBgn0177069 I 0.988
GD12173 Drosophila simulans FBgn0183909 I 0.988
GJ13774 Drosophila virilis FBgn0200993 I 0.988
GK10566 Drosophila willistoni FBgn0212581 I 0.988
GE22392 Drosophila yakuba FBgn0239615 I 0.988
AAEL011231 Aedes aegypti AAEL011231 I 0.987
AGAP010438 Anopheles gambiae AGAP010438 D 0.987
GA18413 Drosophila pseudoobscura FBgn0078415 I 0.987
GB48727 Apis mellifera GB48727 I 0.987
TC003413 Tribolium castaneum TC003413 I 0.987
LCUP004922 Lucilia cuprina LCUP004922 I 0.987
LDEC003050 Leptinotarsa decemlineata LDEC003050 I 0.987
AALB007603 Anopheles albimanus AALB007603 I 0.987
AARA005929 Anopheles arabiensis AARA005929 I 0.987
AATE013762 Anopheles atroparvus AATE013762 I 0.987
ACUA011505 Anopheles culicifacies ACUA011505 I 0.987
ADIR005732 Anopheles dirus ADIR005732 I 0.987
AEPI004043 Anopheles epiroticus AEPI004043 I 0.987
AFAF014433 Anopheles farauti AFAF014433 I 0.987
AFUN003486 Anopheles funestus AFUN003486 I 0.987
AMEM014965 Anopheles merus AMEM014965 I 0.987
AMIN004996 Anopheles minimus AMIN004996 I 0.987
AQUA005997 Anopheles quadriannulatus AQUA005997 I 0.987
ASIS019127 Anopheles sinensis ASIS019127 I 0.987
MDOA008593 Musca domestica MDOA008593 I 0.987
PPAI002202 Phlebotomus papatasi PPAI002202 I 0.987
DAPPUDRAFT_290668 Daphnia pulex DAPPUDRAFT_290668 I 0.983
HMEL010451 Heliconius melpomene HMEL010451 I 0.983
KGM_10290 Danaus plexippus KGM_10290 I 0.983
Cflo_03607--XP_395932.2_APIME Camponotus floridanus Cflo_03607--XP_395932.2_APIME I 0.983
HHAL001315-PA Halyomorpha halys HHAL001315-PA I 0.983
LCUP004920 Lucilia cuprina LCUP004920 I 0.982
MDOA012160 Musca domestica MDOA012160 I 0.982
AGAP028221 Anopheles gambiae AGAP028221 I 0.981
kni Drosophila melanogaster FBgn0001320 D 0.981
kni Drosophila virilis FBgn0013118 I 0.981
kni Drosophila simulans FBgn0044187 I 0.981
kni Drosophila sechellia FBgn0044208 I 0.981
GA18381 Drosophila pseudoobscura FBgn0078384 I 0.981
GF24121 Drosophila ananassae FBgn0101115 I 0.981
GG13292 Drosophila erecta FBgn0105564 I 0.981
GH16981 Drosophila grimshawi FBgn0124452 I 0.981
GI11896 Drosophila mojavensis FBgn0134654 I 0.981
GL12762 Drosophila persimilis FBgn0150368 I 0.981
GK10545 Drosophila willistoni FBgn0212560 I 0.981
GE22389 Drosophila yakuba FBgn0239612 I 0.981
KGM_21348 Danaus plexippus KGM_21348 I 0.981
TC003409 Tribolium castaneum TC003409 I 0.981
Hsal_02927--XP_395932.2_APIME Harpegnathos saltator Hsal_02927--XP_395932.2_APIME I 0.980
ACEP13260 Atta cephalotes ACEP13260 I 0.979
PHUM470190 Pediculus humanus PHUM470190 I 0.979
ACYPI066036 Acyrthosiphon pisum ACYPI066036 I 0.978
ACYPI48166 Acyrthosiphon pisum ACYPI48166 I 0.978
ACYPI56791 Acyrthosiphon pisum ACYPI56791 I 0.978
L798_11128 Zootermopsis nevadensis L798_11128 I 0.978
RPRC003216 Rhodnius prolixus RPRC003216 I 0.978
SINV19531 Solenopsis invicta SINV19531 I 0.978
CLEC007515 Cimex lectularius CLEC007515 I 0.978
CLEC025065 Cimex lectularius CLEC025065 I 0.978
ACEP12797 Atta cephalotes ACEP12797 I 0.977
GB51231 Apis mellifera GB51231 I 0.977
NV16468 Nasonia vitripennis NV16468 I 0.977
SINV19432 Solenopsis invicta SINV19432 I 0.977
Cflo_03603--XP_001120531.1_APIME Camponotus floridanus Cflo_03603--XP_001120531.1_APIME I 0.977
Hsal_02936--XP_001120531.1_APIME Harpegnathos saltator Hsal_02936--XP_001120531.1_APIME I 0.977
LCUP004919 Lucilia cuprina LCUP004919 I 0.977
MDOA002495 Musca domestica MDOA002495 I 0.977
PHUM468660 Pediculus humanus PHUM468660 I 0.974
SMAR012614 Strigamia maritima SMAR012614 I 0.973
tetur34g00430 Tetranychus urticae tetur34g00430 I 0.967
DAPPUDRAFT_290673 Daphnia pulex DAPPUDRAFT_290673 I 0.966
eg Drosophila melanogaster FBgn0000560 D 0.965
GA20312 Drosophila pseudoobscura FBgn0080307 I 0.965
GF25170 Drosophila ananassae FBgn0102162 I 0.965
GG16225 Drosophila erecta FBgn0108460 I 0.965
GH16373 Drosophila grimshawi FBgn0123844 I 0.965
GI11566 Drosophila mojavensis FBgn0134326 I 0.965
GL24862 Drosophila persimilis FBgn0162450 I 0.965
GD15001 Drosophila simulans FBgn0186673 I 0.965
GK17344 Drosophila willistoni FBgn0219343 I 0.965
GE19793 Drosophila yakuba FBgn0237126 I 0.965
GE23274 Drosophila yakuba FBgn0240471 I 0.965
GJ11245 Drosophila virilis FBgn0198506 I 0.963
Hsal_02933--XP_001120662.1_APIME Harpegnathos saltator Hsal_02933--XP_001120662.1_APIME I 0.958
GL12764 Drosophila persimilis FBgn0150370 I 0.957
GB52331 Apis mellifera GB52331 I 0.936
nRc.2.0.1.g43935 Romanomermis culicivorax nRc.2.0.1.g43935 I 0.890
HDID_0000406601 Hymenolepis diminuta HDID_0000406601 I 0.807
HNAJ_0001369901 Hymenolepis nana HNAJ_0001369901 I 0.807