Ppa-nhr-3 (Pristionchus pacificus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 PPA28597 T305939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.817 0.514
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.802 0.571
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.802 0.571
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.782 0.543
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.782 0.543
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.782 0.543
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.782 0.543
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.755 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA28597 Nuclear receptor 46 115

Links

Other Nuclear receptor family TFs
Other Pristionchus pacificus TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000739 Ricinus communis 29814.m000739 I
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I
ABI4 Arabidopsis thaliana AT2G40220 I
BGIOSGA018232 Oryza indica BGIOSGA018232 I
Bo3g034810 Brassica oleracea Bo3g034810 I
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I
Bra000178 Brassica rapa Bra000178 I
Bra004978 Brassica rapa Bra004978 I
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I
Carubv10025253m.g Capsella rubella Carubv10025253m.g I
cassava20838.m1 Manihot esculenta cassava20838.m1 I
cassava41265.m1 Manihot esculenta cassava41265.m1 I
Ca_12465 Cicer arietinum Ca_12465 I
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I
Cla006708 Citrullus lanatus Cla006708 I
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I
GLYMA02G43240 Glycine max GLYMA02G43240 I
GLYMA14G06290 Glycine max GLYMA14G06290 I
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I
abi4 Zea mays GRMZM2G093595 D
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I
LPERR05G10140 Leersia perrieri LPERR05G10140 I
Lus10009834.g Linum usitatissimum Lus10009834.g I
Lus10040944.g Linum usitatissimum Lus10040944.g I
MDP0000225376 Malus domestica MDP0000225376 I
MDP0000628484 Malus domestica MDP0000628484 I
mgf024416m Mimulus guttatus mgf024416m I
MTR_5g082950 Medicago truncatula MTR_5g082950 I
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I
OMERI05G11540 Oryza meridionalis OMERI05G11540 I
ONIVA05G13490 Oryza nivara ONIVA05G13490 I
OPUNC05G11000 Oryza punctata OPUNC05G11000 I
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I
ABI4 Oryza sativa OS05G0351200 I
Pavir.J29572 Panicum virgatum Pavir.J29572 I
Pavir.J33237 Panicum virgatum Pavir.J33237 I
Pavir.J38620 Panicum virgatum Pavir.J38620 I
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I
Pm018953 Prunus mume Pm018953 I
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I
Sb09g016550 Sorghum bicolor Sb09g016550 I
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I
TCM_042471 Theobroma cacao TCM_042471 I
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I
ABI4 Vitis vinifera VIT_13s0067g01400 I