CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-274
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00021522
T306379_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Y41D4B.21a
Nuclear receptor
34
103
DGCAVCGDRVNGKRYGAPACLGCIVFFRRAVTNEVTYKCLKGGTCVITNESRCICRYCRLQKCYTVGMKA
Y41D4B.21c
Nuclear receptor
34
103
DGCAVCGDRVNGKRYGAPACLGCIVFFRRAVTNEVTYKCLKGGTCVITNESRCICRYCRLQKCYTVGMKA
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30198.m000869
Ricinus communis
30198.m000869
I
Aquca_018_00039
Aquilegia coerulea
Aquca_018_00039
I
AT5G57150
Arabidopsis thaliana
AT5G57150
N
BGIOSGA007229
Oryza indica
BGIOSGA007229
I
BGIOSGA040642
Oryza indica
BGIOSGA040642
N
Bo3g019430
Brassica oleracea
Bo3g019430
N
Bo9g130890
Brassica oleracea
Bo9g130890
N
Bostr.26833s0543
Boechera stricta
Bostr.26833s0543
N
Bra002756
Brassica rapa
Bra002756
N
Bra006831
Brassica rapa
Bra006831
N
Bra020462
Brassica rapa
Bra020462
N
BRADI3G01910
Brachypodium distachyon
BRADI3G01910
I
BRADI5G01900
Brachypodium distachyon
BRADI5G01900
N
BRADI5G05110
Brachypodium distachyon
BRADI5G05110
N
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
Cagra.1569s0024
Capsella grandiflora
Cagra.1569s0024
N
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
cassava2551.valid.m1
Manihot esculenta
cassava2551.valid.m1
I
cassava2552.valid.m1
Manihot esculenta
cassava2552.valid.m1
I
cassava2997.m1
Manihot esculenta
cassava2997.m1
I
Ciclev10009285m.g
Citrus clementina
Ciclev10009285m.g
I
Cla010249
Citrullus lanatus
Cla010249
N
Cla023112
Citrullus lanatus
Cla023112
I
Cucsa.088960
Cucumis sativus
Cucsa.088960
I
Cucsa.282100
Cucumis sativus
Cucsa.282100
N
Cucsa.286080
Cucumis sativus
Cucsa.286080
N
Eucgr.C02208
Eucalyptus grandis
Eucgr.C02208
I
evm.TU.supercontig_115.71
Carica papaya
evm.TU.supercontig_115.71
N
F775_04545
Aegilops tauschii
F775_04545
N
F775_11333
Aegilops tauschii
F775_11333
N
fgenesh2_kg.8__1627__AT5G57150.1
Arabidopsis lyrata
fgenesh2_kg.8__1627__AT5G57150.1
N
gene17273-v1.0-hybrid
Fragaria vesca
gene17273-v1.0-hybrid
I
gene23715-v1.0-hybrid
Fragaria vesca
gene23715-v1.0-hybrid
I
GLYMA05G38530
Glycine max
GLYMA05G38530
I
GLYMA09G06770
Glycine max
GLYMA09G06770
I
GLYMA13G00480
Glycine max
GLYMA13G00480
I
GLYMA15G18070
Glycine max
GLYMA15G18070
I
GLYMA16G26291
Glycine max
GLYMA16G26291
I
GLYMA17G06610
Glycine max
GLYMA17G06610
I
Gorai.009G002200
Gossypium raimondii
Gorai.009G002200
I
Gorai.013G242800
Gossypium raimondii
Gorai.013G242800
I
GRMZM2G042893
Zea mays
GRMZM2G042893
N
GRMZM2G042895
Zea mays
GRMZM2G042895
N
GRMZM2G119823
Zea mays
GRMZM2G119823
I
GRMZM2G139372
Zea mays
GRMZM2G139372
N
GSMUA_Achr10G23370_001
Musa acuminata
GSMUA_Achr10G23370_001
I
GSMUA_Achr6G30900_001
Musa acuminata
GSMUA_Achr6G30900_001
N
GSMUA_Achr7G16000_001
Musa acuminata
GSMUA_Achr7G16000_001
I
LPERR04G04520
Leersia perrieri
LPERR04G04520
N
Lus10006951.g
Linum usitatissimum
Lus10006951.g
I
MDP0000133262
Malus domestica
MDP0000133262
I
MDP0000318229
Malus domestica
MDP0000318229
I
mgf019723m
Mimulus guttatus
mgf019723m
I
mgf024029m
Mimulus guttatus
mgf024029m
I
MLOC_44850
Hordeum vulgare
MLOC_44850
N
MLOC_52192
Hordeum vulgare
MLOC_52192
I
MLOC_62844
Hordeum vulgare
MLOC_62844
N
MTR_2g038040
Medicago truncatula
MTR_2g038040
I
OBART02G01550
Oryza barthii
OBART02G01550
I
OBART04G06880
Oryza barthii
OBART04G06880
N
OGLUM02G01420
Oryza glumaepatula
OGLUM02G01420
I
OGLUM04G06620
Oryza glumaepatula
OGLUM04G06620
N
OMERI02G00890
Oryza meridionalis
OMERI02G00890
I
OMERI03G04020
Oryza meridionalis
OMERI03G04020
N
ONIVA01G07170
Oryza nivara
ONIVA01G07170
N
ONIVA02G01430
Oryza nivara
ONIVA02G01430
I
OPUNC02G01010
Oryza punctata
OPUNC02G01010
I
OPUNC04G05630
Oryza punctata
OPUNC04G05630
N
orange1.1g025665m.g
Citrus sinensis
orange1.1g025665m.g
I
ORGLA02G0014200
Oryza glaberrima
ORGLA02G0014200
I
ORUFI02G01530
Oryza rufipogon
ORUFI02G01530
I
ORUFI04G07860
Oryza rufipogon
ORUFI04G07860
N
TDR
Oryza sativa
OS02G0120500
I
OS04G0301500
Oryza sativa
OS04G0301500
N
Pavir.Ab00204
Panicum virgatum
Pavir.Ab00204
I
Pavir.Ga02255
Panicum virgatum
Pavir.Ga02255
N
Pavir.Ga02256
Panicum virgatum
Pavir.Ga02256
N
Pavir.Ga02257
Panicum virgatum
Pavir.Ga02257
N
Pavir.Gb02205
Panicum virgatum
Pavir.Gb02205
N
Pavir.Gb02374
Panicum virgatum
Pavir.Gb02374
N
Pavir.J18808
Panicum virgatum
Pavir.J18808
N
PDK_20s1308051g001
Phoenix dactylifera
PDK_20s1308051g001
N
PGSC0003DMG400004087
Solanum tuberosum
PGSC0003DMG400004087
I
PK06841.1
Cannabis sativa
PK06841.1
I
Pm008898
Prunus mume
Pm008898
I
Pm020878
Prunus mume
Pm020878
N
Pm020879
Prunus mume
Pm020879
I
POPTR_0006s07440
Populus trichocarpa
POPTR_0006s07440
N
POPTR_0018s13860
Populus trichocarpa
POPTR_0018s13860
I
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
PRUPE_ppa022211mg
Prunus persica
PRUPE_ppa022211mg
I
SapurV1A.0140s0210
Salix purpurea
SapurV1A.0140s0210
I
Sb04g001650
Sorghum bicolor
Sb04g001650
I
Sb07g004190
Sorghum bicolor
Sb07g004190
N
Si006500m.g
Setaria italica
Si006500m.g
I
Si010413m.g
Setaria italica
Si010413m.g
N
Si010685m.g
Setaria italica
Si010685m.g
N
Si010812m.g
Setaria italica
Si010812m.g
N
Si019518m.g
Setaria italica
Si019518m.g
I
Solyc07g018010.2
Solanum lycopersicum
Solyc07g018010.2
I
TCM_039471
Theobroma cacao
TCM_039471
I
Thhalv10014506m.g
Eutrema salsugineum
Thhalv10014506m.g
N
Traes_2AL_411B944D6
Triticum aestivum
Traes_2AL_411B944D6
N
Traes_2BL_070D9E2AD
Triticum aestivum
Traes_2BL_070D9E2AD
N
Traes_2BL_8FED05903
Triticum aestivum
Traes_2BL_8FED05903
N
Traes_2DL_8BE259F4B
Triticum aestivum
Traes_2DL_8BE259F4B
N
Traes_2DL_DE3909A32
Triticum aestivum
Traes_2DL_DE3909A32
N
Traes_4DL_55503B3CD
Triticum aestivum
Traes_4DL_55503B3CD
N
Traes_5AL_331CE753D
Triticum aestivum
Traes_5AL_331CE753D
N
Traes_6AS_4C2F64614
Triticum aestivum
Traes_6AS_4C2F64614
I
Traes_6AS_66A98BA55
Triticum aestivum
Traes_6AS_66A98BA55
I
TRIUR3_16896
Triticum urartu
TRIUR3_16896
N
VIT_11s0052g00100
Vitis vinifera
VIT_11s0052g00100
I