CBG23697_CONSTRUCT (PBM CONSTRUCTS)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 CBG23697_CONSTRUCT T306948_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG23697_CONSTRUCT
M01299_2.00		 PBM CONSTRUCTS
NNTKTGTGTYN
NRACACAMANN		 PBM
Lambert et al.(2019)
pTH11459		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.745 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01299_2.00 Nuclear receptor 11 74

DNA Binding Domains

Protein ID Domain From To Sequence
CBG23697_CONSTRUCT Nuclear receptor 11 74

Links

Other Nuclear receptor family TFs
Other PBM CONSTRUCTS TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30005.m001261 Ricinus communis 30005.m001261 N
Aquca_108_00051 Aquilegia coerulea Aquca_108_00051 N
BGIOSGA014805 Oryza indica BGIOSGA014805 N
Bo1g147290 Brassica oleracea Bo1g147290 N
Bo3g061340 Brassica oleracea Bo3g061340 N
Bra001258 Brassica rapa Bra001258 N
Bra029658 Brassica rapa Bra029658 N
Bra040015 Brassica rapa Bra040015 N
cassava24109.valid.m1 Manihot esculenta cassava24109.valid.m1 N
Ca_02700 Cicer arietinum Ca_02700 N
Ciclev10016354m.g Citrus clementina Ciclev10016354m.g N
Ciclev10021850m.g Citrus clementina Ciclev10021850m.g N
Cla012999 Citrullus lanatus Cla012999 N
Cucsa.095530 Cucumis sativus Cucsa.095530 N
Gorai.004G060500 Gossypium raimondii Gorai.004G060500 N
Gorai.007G162200 Gossypium raimondii Gorai.007G162200 N
Gorai.011G138900 Gossypium raimondii Gorai.011G138900 N
Gorai.N001000 Gossypium raimondii Gorai.N001000 N
GSMUA_Achr3G19260_001 Musa acuminata GSMUA_Achr3G19260_001 N
Lus10025581.g Linum usitatissimum Lus10025581.g N
Lus10025582.g Linum usitatissimum Lus10025582.g N
Lus10027045.g Linum usitatissimum Lus10027045.g N
mgf000871m Mimulus guttatus mgf000871m N
mgf025428m Mimulus guttatus mgf025428m N
MTR_2g099155 Medicago truncatula MTR_2g099155 N
OBART04G17310 Oryza barthii OBART04G17310 N
OGLUM04G17350 Oryza glumaepatula OGLUM04G17350 N
OLONG_009317 Oryza longistaminata OLONG_009317 N
OMERI04G14610 Oryza meridionalis OMERI04G14610 N
ONIVA04G15620 Oryza nivara ONIVA04G15620 N
OPUNC04G15120 Oryza punctata OPUNC04G15120 N
orange1.1g024388m.g Citrus sinensis orange1.1g024388m.g N
orange1.1g025458m.g Citrus sinensis orange1.1g025458m.g N
ORGLA04G0144300 Oryza glaberrima ORGLA04G0144300 N
ORUFI04G18740 Oryza rufipogon ORUFI04G18740 N
Pavir.Ga01503 Panicum virgatum Pavir.Ga01503 N
Pavir.J08977 Panicum virgatum Pavir.J08977 N
PGSC0003DMG400020996 Solanum tuberosum PGSC0003DMG400020996 N
POPTR_0014s17210 Populus trichocarpa POPTR_0014s17210 N
Si010917m.g Setaria italica Si010917m.g N
TCM_002550 Theobroma cacao TCM_002550 N
TCM_019960 Theobroma cacao TCM_019960 N
TCM_019968 Theobroma cacao TCM_019968 N
Thhalv10021333m.g Eutrema salsugineum Thhalv10021333m.g N
Traes_2AL_6990211D0 Triticum aestivum Traes_2AL_6990211D0 N