SMTD_0001673901 (Schistosoma mattheei)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SMTD_0001673901 T310392_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
dsf
M06431_2.00 		Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT		 B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381 		0.929 0.757
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.886 0.686
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.886 0.686
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.886 0.686
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.886 0.686
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.886 0.686
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.886 0.686
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.886 0.686
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.886 0.686
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.886 0.686
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.775 0.586
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.775 0.586
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.775 0.586
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.775 0.586
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.775 0.586
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.775 0.586
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.768 0.571
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.768 0.571
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.768 0.571
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.768 0.571
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.768 0.571
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.768 0.571
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.768 0.571
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.768 0.571
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.768 0.571
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.768 0.571
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.768 0.571
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.768 0.571
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.768 0.571
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.768 0.571
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.768 0.571
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.768 0.571
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.768 0.571
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.768 0.571
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.768 0.571
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.768 0.571
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.768 0.571
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.768 0.571
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.768 0.571
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.768 0.571
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.768 0.571
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.768 0.571
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.768 0.571
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.768 0.571
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.768 0.571
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.768 0.571
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.768 0.571
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.768 0.571
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.764 0.571
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.764 0.571
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.764 0.571
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.764 0.571
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.764 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMTD_0001673901-mRNA-1 Nuclear receptor 138 211

Links

Other Nuclear receptor family TFs
Other Schistosoma mattheei TFs

357 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27964.m000369 Ricinus communis 27964.m000369 I
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I
BGIOSGA022006 Oryza indica BGIOSGA022006 I
BGIOSGA027883 Oryza indica BGIOSGA027883 I
BRADI1G50057 Brachypodium distachyon BRADI1G50057 I
BRADI3G13727 Brachypodium distachyon BRADI3G13727 I
cassava33021.m1 Manihot esculenta cassava33021.m1 I
Ca_22425 Cicer arietinum Ca_22425 I
Ca_22426 Cicer arietinum Ca_22426 I
F775_11081 Aegilops tauschii F775_11081 I
F775_15263 Aegilops tauschii F775_15263 N
F775_17666 Aegilops tauschii F775_17666 N
F775_21626 Aegilops tauschii F775_21626 I
F775_21627 Aegilops tauschii F775_21627 I
gene18636-v1.0-hybrid Fragaria vesca gene18636-v1.0-hybrid I
GLYMA07G05660 Glycine max GLYMA07G05660 I
GLYMA16G02200 Glycine max GLYMA16G02200 I
GLYMA19G44890 Glycine max GLYMA19G44890 I
GLYMA19G44910 Glycine max GLYMA19G44910 N
Gorai.007G112500 Gossypium raimondii Gorai.007G112500 I
GRMZM2G069047 Zea mays GRMZM2G069047 I
GRMZM2G092465 Zea mays GRMZM2G092465 I
GRMZM2G171395 Zea mays GRMZM2G171395 I
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I
LPERR06G01790 Leersia perrieri LPERR06G01790 I
LPERR08G01440 Leersia perrieri LPERR08G01440 I
MDP0000563165 Malus domestica MDP0000563165 I
MLOC_65480 Hordeum vulgare MLOC_65480 N
MLOC_66924 Hordeum vulgare MLOC_66924 I
MLOC_75524 Hordeum vulgare MLOC_75524 I
MTR_8g024480 Medicago truncatula MTR_8g024480 I
OB06G11970 Oryza brachyantha OB06G11970 I
OB08G11290 Oryza brachyantha OB08G11290 I
OBART06G01950 Oryza barthii OBART06G01950 I
OBART08G01110 Oryza barthii OBART08G01110 I
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I
OMERI06G01850 Oryza meridionalis OMERI06G01850 I
OMERI08G01360 Oryza meridionalis OMERI08G01360 I
ONIVA06G02290 Oryza nivara ONIVA06G02290 I
ONIVA08G01130 Oryza nivara ONIVA08G01130 I
OPUNC06G01800 Oryza punctata OPUNC06G01800 I
OPUNC08G01110 Oryza punctata OPUNC08G01110 I
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I
OS06G0131700 Oryza sativa OS06G0131700 D
OS08G0115800 Oryza sativa OS08G0115800 I
Pavir.J07835 Panicum virgatum Pavir.J07835 I
Pavir.J20698 Panicum virgatum Pavir.J20698 I
Pavir.J21162 Panicum virgatum Pavir.J21162 I
PGSC0003DMG400012113 Solanum tuberosum PGSC0003DMG400012113 I
PK04961.1 Cannabis sativa PK04961.1 I
Pm018292 Prunus mume Pm018292 I
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I
PRUPE_ppa020746mg Prunus persica PRUPE_ppa020746mg I
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I
Sb07g001550 Sorghum bicolor Sb07g001550 I
Sb10g002120 Sorghum bicolor Sb10g002120 I
Si006565m.g Setaria italica Si006565m.g I
TCM_005047 Theobroma cacao TCM_005047 I
Traes_4AL_2257954B9 Triticum aestivum Traes_4AL_2257954B9 I
Traes_4AL_3AFF9664B Triticum aestivum Traes_4AL_3AFF9664B I
Traes_4AL_8FABAA6C3 Triticum aestivum Traes_4AL_8FABAA6C3 I
Traes_4AL_99942CBEA Triticum aestivum Traes_4AL_99942CBEA N
Traes_4AL_A5E7EC1A3 Triticum aestivum Traes_4AL_A5E7EC1A3 N
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I
Traes_7DS_1E7BBCDCF Triticum aestivum Traes_7DS_1E7BBCDCF N
Traes_7DS_5CB1C2862 Triticum aestivum Traes_7DS_5CB1C2862 N
TRIUR3_14543 Triticum urartu TRIUR3_14543 I
TRIUR3_14544 Triticum urartu TRIUR3_14544 I
TRIUR3_14545 Triticum urartu TRIUR3_14545 I
TRIUR3_27911 Triticum urartu TRIUR3_27911 I