CGI_10005222 (Crassostrea gigas)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 CGI_10005222 T311478_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.944 0.944
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.944 0.944
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.944 0.944
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.944 0.944
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.944 0.944
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.944 0.944
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.944 0.944
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.936 0.936
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.848 0.848
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.848 0.848
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.848 0.848
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.736 0.736
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.736 0.736
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.736 0.736
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.736 0.736
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.736 0.736
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.736 0.736
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.736 0.736
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.736 0.736
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.736 0.736
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.736 0.736
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.736 0.736
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.736 0.736
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.736 0.736
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.736 0.736
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.736 0.736
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.736 0.736
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.736 0.736
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.736 0.736
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.728 0.728
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.720 0.720
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.720 0.720
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.720 0.720
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.720 0.720
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.720 0.720
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.712 0.712
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.712 0.712
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC39574 Paired box 11 135

Links

Other Paired box family TFs
Other Crassostrea gigas TFs

472 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29686.m000890 Ricinus communis 29686.m000890 I
29785.m000932 Ricinus communis 29785.m000932 I
29823.m000215 Ricinus communis 29823.m000215 I
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I
MYB101 Arabidopsis thaliana AT2G32460 D
ATMYB65 Arabidopsis thaliana AT3G11440 D
MYB33 Arabidopsis thaliana AT5G06100 D
ATMYB120 Arabidopsis thaliana AT5G55020 I
GAM1 Oryza indica BGIOSGA004670 I
BGIOSGA017818 Oryza indica BGIOSGA017818 I
Bo1g141040 Brassica oleracea Bo1g141040 I
Bo3g026690 Brassica oleracea Bo3g026690 I
Bo4g046000 Brassica oleracea Bo4g046000 I
Bo4g178040 Brassica oleracea Bo4g178040 I
Bo5g136570 Brassica oleracea Bo5g136570 I
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I
Bra002042 Brassica rapa Bra002042 I
Bra002938 Brassica rapa Bra002938 I
Bra005597 Brassica rapa Bra005597 I
Bra012038 Brassica rapa Bra012038 I
Bra021791 Brassica rapa Bra021791 I
Bra022888 Brassica rapa Bra022888 I
Bra034842 Brassica rapa Bra034842 I
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I
Carubv10000715m.g Capsella rubella Carubv10000715m.g I
Carubv10013393m.g Capsella rubella Carubv10013393m.g I
Carubv10025227m.g Capsella rubella Carubv10025227m.g I
Carubv10026070m.g Capsella rubella Carubv10026070m.g I
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I
cassava32672.m1 Manihot esculenta cassava32672.m1 I
cassava40302.m1 Manihot esculenta cassava40302.m1 I
cassava44767.m1 Manihot esculenta cassava44767.m1 I
Ca_07119 Cicer arietinum Ca_07119 I
Ca_12826 Cicer arietinum Ca_12826 I
Ca_15422 Cicer arietinum Ca_15422 I
Ca_20081 Cicer arietinum Ca_20081 I
Ca_21739 Cicer arietinum Ca_21739 I
Ca_25013 Cicer arietinum Ca_25013 I
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I
Cla005406 Citrullus lanatus Cla005406 I
Cla007782 Citrullus lanatus Cla007782 I
Cla013880 Citrullus lanatus Cla013880 I
Cla016951 Citrullus lanatus Cla016951 I
Cucsa.060080 Cucumis sativus Cucsa.060080 I
Cucsa.148580 Cucumis sativus Cucsa.148580 I
Cucsa.364400 Cucumis sativus Cucsa.364400 I
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I
F775_23034 Aegilops tauschii F775_23034 I
F775_28392 Aegilops tauschii F775_28392 I
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I
GAM1_ORYSI Oryza sativa GAM1_ORYSI D
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I
GLYMA06G47000 Glycine max GLYMA06G47000 I
GLYMA08G42920 Glycine max GLYMA08G42920 I
GLYMA08G42955 Glycine max GLYMA08G42955 I
GLYMA12G31950 Glycine max GLYMA12G31950 I
GLYMA13G04031 Glycine max GLYMA13G04031 I
GLYMA13G25716 Glycine max GLYMA13G25716 I
GLYMA13G38521 Glycine max GLYMA13G38521 I
GLYMA15G35860 Glycine max GLYMA15G35860 I
GLYMA18G10921 Glycine max GLYMA18G10921 I
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I
GRMZM2G139688 Zea mays GRMZM2G139688 I
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I
LPERR05G16930 Leersia perrieri LPERR05G16930 I
Lus10008685.g Linum usitatissimum Lus10008685.g I
Lus10021539.g Linum usitatissimum Lus10021539.g I
Lus10026142.g Linum usitatissimum Lus10026142.g I
Lus10026787.g Linum usitatissimum Lus10026787.g I
Lus10036103.g Linum usitatissimum Lus10036103.g I
Lus10040063.g Linum usitatissimum Lus10040063.g I
MDP0000147309 Malus domestica MDP0000147309 I
MDP0000151688 Malus domestica MDP0000151688 I
MDP0000167314 Malus domestica MDP0000167314 I
MDP0000175835 Malus domestica MDP0000175835 I
MDP0000176798 Malus domestica MDP0000176798 I
MDP0000179306 Malus domestica MDP0000179306 I
MDP0000264051 Malus domestica MDP0000264051 I
mgf002965m Mimulus guttatus mgf002965m I
mgf010934m Mimulus guttatus mgf010934m I
mgf019173m Mimulus guttatus mgf019173m I
mgf020500m Mimulus guttatus mgf020500m I
mgf023205m Mimulus guttatus mgf023205m I
mgf025568m Mimulus guttatus mgf025568m I
MLOC_6041 Hordeum vulgare MLOC_6041 I
MTR_1g021230 Medicago truncatula MTR_1g021230 I
MTR_2g088170 Medicago truncatula MTR_2g088170 I
MTR_3g011610 Medicago truncatula MTR_3g011610 I
MTR_3g052430 Medicago truncatula MTR_3g052430 I
MTR_3g052450 Medicago truncatula MTR_3g052450 I
MTR_8g042410 Medicago truncatula MTR_8g042410 I
OB01G43550 Oryza brachyantha OB01G43550 I
OBART01G34660 Oryza barthii OBART01G34660 I
OBART05G21120 Oryza barthii OBART05G21120 I
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I
OLONG_019401 Oryza longistaminata OLONG_019401 I
OLONG_020610 Oryza longistaminata OLONG_020610 I
OMERI01G31990 Oryza meridionalis OMERI01G31990 I
OPUNC05G18800 Oryza punctata OPUNC05G18800 I
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I
GAMYB Oryza sativa OS01G0812000 I
OS05G0490600 Oryza sativa OS05G0490600 I
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
PDK_20s1383724g001 Phoenix dactylifera PDK_20s1383724g001 I
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I
PK01088.1 Cannabis sativa PK01088.1 I
PK15478.1 Cannabis sativa PK15478.1 I
Pm015094 Prunus mume Pm015094 I
Pm016605 Prunus mume Pm016605 I
Pm027586 Prunus mume Pm027586 I
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I
MYB101 Populus trichocarpa POPTR_0002s21300 I
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I
myb.Ph3 Petunia x hybrida Q02994_PETHY D
Gam1 Hordeum vulgare Q96464_HORVU D
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I
Sb03g037680 Sorghum bicolor Sb03g037680 I
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I
Si000907m.g Setaria italica Si000907m.g I
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I
TCM_011907 Theobroma cacao TCM_011907 I
TCM_041010 Theobroma cacao TCM_041010 I
TCM_044611 Theobroma cacao TCM_044611 I
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I
TRIUR3_17275 Triticum urartu TRIUR3_17275 I
TRIUR3_20797 Triticum urartu TRIUR3_20797 I
TRIUR3_27104 Triticum urartu TRIUR3_27104 I
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I