CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra022888
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra022888
T267949_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.893
0.957
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.893
0.957
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.800
0.828
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.799
0.828
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.799
0.828
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.799
0.828
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.791
0.806
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.791
0.806
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.774
0.796
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.725
0.763
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.725
0.763
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.711
0.774
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.711
0.774
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.711
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022888.1-P
Myb
19
66
KGSWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCRLRWANHL
Bra022888.1-P
Myb
72
117
KGSFSPDEEKIIIELHAKMGNKWARMASQLPGRTDNEIKNYWNTRM
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
237 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB101
Arabidopsis thaliana
AT2G32460
D
0.893
Bo3g026690
Brassica oleracea
Bo3g026690
I
0.893
Bra021791
Brassica rapa
Bra021791
I
0.893
MYB101
Arabidopsis lyrata
fgenesh2_kg.4__1233__AT2G32460.2
I
0.893
Bostr.23794s0867
Boechera stricta
Bostr.23794s0867
I
0.893
Cagra.0352s0034
Capsella grandiflora
Cagra.0352s0034
I
0.876
Carubv10025227m.g
Capsella rubella
Carubv10025227m.g
I
0.876
Thhalv10016567m.g
Eutrema salsugineum
Thhalv10016567m.g
I
0.876
Bo4g178040
Brassica oleracea
Bo4g178040
I
0.873
Ciclev10014958m.g
Citrus clementina
Ciclev10014958m.g
I
0.864
orange1.1g039708m.g
Citrus sinensis
orange1.1g039708m.g
I
0.864
29823.m000215
Ricinus communis
29823.m000215
I
0.857
TCM_011907
Theobroma cacao
TCM_011907
I
0.855
SapurV1A.1897s0070
Salix purpurea
SapurV1A.1897s0070
I
0.854
SapurV1A.2567s0040
Salix purpurea
SapurV1A.2567s0040
I
0.854
MTR_2g088170
Medicago truncatula
MTR_2g088170
I
0.844
MYB101
Populus trichocarpa
POPTR_0002s21300
I
0.843
MDP0000175835
Malus domestica
MDP0000175835
I
0.843
MDP0000151688
Malus domestica
MDP0000151688
I
0.834
MDP0000176798
Malus domestica
MDP0000176798
I
0.834
Bo4g046000
Brassica oleracea
Bo4g046000
I
0.833
Bra005597
Brassica rapa
Bra005597
I
0.833
cassava11031.m1
Manihot esculenta
cassava11031.m1
I
0.832
gene23946-v1.0-hybrid
Fragaria vesca
gene23946-v1.0-hybrid
I
0.832
Ca_07119
Cicer arietinum
Ca_07119
I
0.826
PGSC0003DMG400028949
Solanum tuberosum
PGSC0003DMG400028949
I
0.825
Solyc07g052300.2
Solanum lycopersicum
Solyc07g052300.2
I
0.825
SapurV1A.0014s1240
Salix purpurea
SapurV1A.0014s1240
I
0.825
GLYMA13G38521
Glycine max
GLYMA13G38521
I
0.818
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.817
Aquca_005_00025
Aquilegia coerulea
Aquca_005_00025
I
0.817
PRUPE_ppa017451mg
Prunus persica
PRUPE_ppa017451mg
I
0.815
Cla007782
Citrullus lanatus
Cla007782
I
0.815
Pm015094
Prunus mume
Pm015094
I
0.815
Cucsa.148580
Cucumis sativus
Cucsa.148580
I
0.815
gw1.238.44.1
Physcomitrella patens
gw1.238.44.1
I
0.808
MDP0000179306
Malus domestica
MDP0000179306
I
0.808
GLYMA18G10921
Glycine max
GLYMA18G10921
I
0.807
GLYMA12G31950
Glycine max
GLYMA12G31950
I
0.801
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.801
VIT_19s0090g00590
Vitis vinifera
VIT_19s0090g00590
I
0.800
Q9FR42_TOBAC
Nicotiana tabacum
Q9FR42_TOBAC
D
0.800
myb.Ph3
Petunia x hybrida
Q02994_PETHY
D
0.799
PGSC0003DMG400013897
Solanum tuberosum
PGSC0003DMG400013897
I
0.797
Cla005406
Citrullus lanatus
Cla005406
I
0.797
evm.TU.supercontig_34.210
Carica papaya
evm.TU.supercontig_34.210
I
0.797
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.795
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.795
TCM_041010
Theobroma cacao
TCM_041010
I
0.795
PRUPE_ppa019943mg
Prunus persica
PRUPE_ppa019943mg
I
0.792
mgf002965m
Mimulus guttatus
mgf002965m
I
0.792
gene03321-v1.0-hybrid
Fragaria vesca
gene03321-v1.0-hybrid
I
0.792
gene03323-v1.0-hybrid
Fragaria vesca
gene03323-v1.0-hybrid
I
0.792
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.791
F775_28392
Aegilops tauschii
F775_28392
I
0.791
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.791
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.791
Si000907m.g
Setaria italica
Si000907m.g
I
0.791
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.791
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.791
Ca_25013
Cicer arietinum
Ca_25013
I
0.791
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.791
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.786
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.786
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.786
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.786
cassava30977.valid.m1
Manihot esculenta
cassava30977.valid.m1
I
0.786
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.783
Pm016605
Prunus mume
Pm016605
I
0.783
gw1.66.160.1
Physcomitrella patens
gw1.66.160.1
I
0.783
Lus10027189.g
Linum usitatissimum
Lus10027189.g
I
0.783
Lus10035275.g
Linum usitatissimum
Lus10035275.g
I
0.783
MDP0000308617
Malus domestica
MDP0000308617
I
0.783
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.782
MTR_3g052450
Medicago truncatula
MTR_3g052450
I
0.782
Gorai.006G121900
Gossypium raimondii
Gorai.006G121900
I
0.782
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.782
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.782
Lus10040063.g
Linum usitatissimum
Lus10040063.g
I
0.782
Cucsa.060080
Cucumis sativus
Cucsa.060080
I
0.780
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.780
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.779
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.776
PRUPE_ppa022465mg
Prunus persica
PRUPE_ppa022465mg
I
0.775
Ciclev10000756m.g
Citrus clementina
Ciclev10000756m.g
I
0.775
orange1.1g011938m.g
Citrus sinensis
orange1.1g011938m.g
I
0.775
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.775
GAM1
Oryza indica
BGIOSGA004670
I
0.774
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.774
OB01G43550
Oryza brachyantha
OB01G43550
I
0.774
OBART01G34660
Oryza barthii
OBART01G34660
I
0.774
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.774
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.774
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.774
GAMYB
Oryza sativa
OS01G0812000
I
0.774
Lus10021539.g
Linum usitatissimum
Lus10021539.g
I
0.773
Gorai.007G312700
Gossypium raimondii
Gorai.007G312700
I
0.772
SapurV1A.0008s0050
Salix purpurea
SapurV1A.0008s0050
I
0.772
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.769
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.769
TCM_044611
Theobroma cacao
TCM_044611
I
0.769
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.769
29686.m000890
Ricinus communis
29686.m000890
I
0.769
29785.m000932
Ricinus communis
29785.m000932
I
0.769
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.769
mgf025568m
Mimulus guttatus
mgf025568m
I
0.769
Aquca_014_00928
Aquilegia coerulea
Aquca_014_00928
I
0.769
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.769
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.769
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.769
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.769
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.769
TCM_030853
Theobroma cacao
TCM_030853
I
0.767
Gorai.002G089900
Gossypium raimondii
Gorai.002G089900
I
0.767
Ciclev10010620m.g
Citrus clementina
Ciclev10010620m.g
I
0.766
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.766
orange1.1g046419m.g
Citrus sinensis
orange1.1g046419m.g
I
0.766
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.765
Sb03g037680
Sorghum bicolor
Sb03g037680
I
0.764
MYB101
Vitis vinifera
VIT_12s0059g00700
I
0.764
Ca_20081
Cicer arietinum
Ca_20081
I
0.763
GLYMA08G42920
Glycine max
GLYMA08G42920
I
0.760
Ca_21739
Cicer arietinum
Ca_21739
I
0.760
Cucsa.364400
Cucumis sativus
Cucsa.364400
I
0.760
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.758
GLYMA15G35860
Glycine max
GLYMA15G35860
I
0.758
MTR_3g052430
Medicago truncatula
MTR_3g052430
I
0.758
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.758
GSMUA_AchrUn_randomG15100_001
Musa acuminata
GSMUA_AchrUn_randomG15100_001
I
0.757
POPTR_0009s02380
Populus trichocarpa
POPTR_0009s02380
I
0.756
chr3.CM0005.370.nc
Lotus japonicus
chr3.CM0005.370.nc
I
0.756
LjT02G13.10.nc
Lotus japonicus
LjT02G13.10.nc
I
0.755
GLYMA08G42955
Glycine max
GLYMA08G42955
I
0.753
SapurV1A.1951s0020
Salix purpurea
SapurV1A.1951s0020
I
0.753
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.752
Pm011812
Prunus mume
Pm011812
I
0.751
LjSGA_010688.1
Lotus japonicus
LjSGA_010688.1
I
0.751
GLYMA06G47000
Glycine max
GLYMA06G47000
I
0.748
LPERR05G16930
Leersia perrieri
LPERR05G16930
I
0.747
mgf010934m
Mimulus guttatus
mgf010934m
I
0.747
mgf019173m
Mimulus guttatus
mgf019173m
I
0.747
Bostr.13129s0364
Boechera stricta
Bostr.13129s0364
I
0.745
Cagra.2117s0052
Capsella grandiflora
Cagra.2117s0052
I
0.745
Carubv10000715m.g
Capsella rubella
Carubv10000715m.g
I
0.745
Thhalv10013329m.g
Eutrema salsugineum
Thhalv10013329m.g
I
0.745
MTR_3g011610
Medicago truncatula
MTR_3g011610
I
0.744
MDP0000147309
Malus domestica
MDP0000147309
I
0.744
SELMODRAFT_38120
Selaginella moellendorffii
SELMODRAFT_38120
I
0.743
MYB33
Arabidopsis lyrata
fgenesh2_kg.6__546__AT5G06100.3
I
0.741
PGSC0003DMG400022689
Solanum tuberosum
PGSC0003DMG400022689
I
0.740
Solyc01g009070.2
Solanum lycopersicum
Solyc01g009070.2
I
0.740
SapurV1A.0369s0230
Salix purpurea
SapurV1A.0369s0230
I
0.739
PDK_20s1831811g001
Phoenix dactylifera
PDK_20s1831811g001
I
0.739
evm.TU.supercontig_12.292
Carica papaya
evm.TU.supercontig_12.292
I
0.736
Gorai.007G312400
Gossypium raimondii
Gorai.007G312400
I
0.735
Cla013880
Citrullus lanatus
Cla013880
I
0.730
ATMYB120
Arabidopsis thaliana
AT5G55020
I
0.729
Bo9g119060
Brassica oleracea
Bo9g119060
I
0.729
Bra002938
Brassica rapa
Bra002938
I
0.729
Bostr.26833s0761
Boechera stricta
Bostr.26833s0761
I
0.729
Cagra.1629s0073
Capsella grandiflora
Cagra.1629s0073
I
0.729
Carubv10026070m.g
Capsella rubella
Carubv10026070m.g
I
0.729
Thhalv10013018m.g
Eutrema salsugineum
Thhalv10013018m.g
I
0.729
BGIOSGA017818
Oryza indica
BGIOSGA017818
I
0.727
MTR_1g021230
Medicago truncatula
MTR_1g021230
I
0.727
OBART05G21120
Oryza barthii
OBART05G21120
I
0.727
OGLUM05G22330
Oryza glumaepatula
OGLUM05G22330
I
0.727
OPUNC05G18800
Oryza punctata
OPUNC05G18800
I
0.727
ORUFI05G22370
Oryza rufipogon
ORUFI05G22370
I
0.727
OS05G0490600
Oryza sativa
OS05G0490600
I
0.727
VIT_06s0009g02480
Vitis vinifera
VIT_06s0009g02480
I
0.727
MYB33
Arabidopsis thaliana
AT5G06100
D
0.725
mgf020500m
Mimulus guttatus
mgf020500m
I
0.725
Gorai.013G159200
Gossypium raimondii
Gorai.013G159200
I
0.724
GLYMA04G15150
Glycine max
GLYMA04G15150
I
0.723
GSMUA_Achr4G23690_001
Musa acuminata
GSMUA_Achr4G23690_001
I
0.723
GLYMA13G04031
Glycine max
GLYMA13G04031
I
0.722
GRMZM2G028054
Zea mays
GRMZM2G028054
I
0.720
Traes_1BL_CF98E922B
Triticum aestivum
Traes_1BL_CF98E922B
I
0.718
TRIUR3_17275
Triticum urartu
TRIUR3_17275
I
0.718
PK17293.1
Cannabis sativa
PK17293.1
I
0.717
Bra035547
Brassica rapa
Bra035547
I
0.716
LjSGA_057622.2
Lotus japonicus
LjSGA_057622.2
I
0.713
ATMYB65
Arabidopsis thaliana
AT3G11440
D
0.711
Bo5g136570
Brassica oleracea
Bo5g136570
I
0.711
Bra034842
Brassica rapa
Bra034842
I
0.711
ATMYB65
Arabidopsis lyrata
fgenesh2_kg.3__1182__AT3G11440.1
I
0.711
Bostr.19424s1075
Boechera stricta
Bostr.19424s1075
I
0.711
Cagra.1655s0026
Capsella grandiflora
Cagra.1655s0026
I
0.711
Carubv10013393m.g
Capsella rubella
Carubv10013393m.g
I
0.711
Thhalv10020455m.g
Eutrema salsugineum
Thhalv10020455m.g
I
0.711
Bo4g076940
Brassica oleracea
Bo4g076940
I
0.710
ONIVA05G21800
Oryza nivara
ONIVA05G21800
I
0.707
GLYMA20G11040
Glycine max
GLYMA20G11040
I
0.706
Ca_15422
Cicer arietinum
Ca_15422
I
0.702
Bra012038
Brassica rapa
Bra012038
I
0.701
PGSC0003DMG400027418
Solanum tuberosum
PGSC0003DMG400027418
I
0.701
Bo3g021790
Brassica oleracea
Bo3g021790
I
0.700
Bra028997
Brassica rapa
Bra028997
I
0.700
OB03G32840
Oryza brachyantha
OB03G32840
I
0.700
OBART03G24120
Oryza barthii
OBART03G24120
I
0.700
OGLUM03G24880
Oryza glumaepatula
OGLUM03G24880
I
0.700
OLONG_025057
Oryza longistaminata
OLONG_025057
I
0.700
OMERI03G21920
Oryza meridionalis
OMERI03G21920
I
0.700
ONIVA04G15310
Oryza nivara
ONIVA04G15310
I
0.700
OPUNC03G22220
Oryza punctata
OPUNC03G22220
I
0.700
ORGLA03G0224700
Oryza glaberrima
ORGLA03G0224700
I
0.700
ORUFI03G24730
Oryza rufipogon
ORUFI03G24730
I
0.700
OS03G0578900
Oryza sativa
OS03G0578900
I
0.700
PK15478.1
Cannabis sativa
PK15478.1
I
0.700
Ca_06236
Cicer arietinum
Ca_06236
I
0.698
Eucgr.A01122
Eucalyptus grandis
Eucgr.A01122
I
0.698
Si039629m.g
Setaria italica
Si039629m.g
I
0.696
Pavir.Ib03827
Panicum virgatum
Pavir.Ib03827
I
0.696
MYB97
Arabidopsis thaliana
AT4G26930
I
0.693
MYB97
Arabidopsis lyrata
fgenesh2_kg.7__1539__AT4G26930.1
I
0.693
PDK_20s1383724g001
Phoenix dactylifera
PDK_20s1383724g001
I
0.687
GSMUA_Achr10G29280_001
Musa acuminata
GSMUA_Achr10G29280_001
I
0.684
LjSGA_026914.2
Lotus japonicus
LjSGA_026914.2
I
0.684
LPERR03G20110
Leersia perrieri
LPERR03G20110
I
0.680
AC217264.3_FG005
Zea mays
AC217264.3_FG005
I
0.679
GRMZM2G070523
Zea mays
GRMZM2G070523
I
0.679
Sb01g015920
Sorghum bicolor
Sb01g015920
I
0.679
OPUNC06G18670
Oryza punctata
OPUNC06G18670
I
0.678
F775_23034
Aegilops tauschii
F775_23034
I
0.676
TRIUR3_20797
Triticum urartu
TRIUR3_20797
I
0.676
OBART06G20450
Oryza barthii
OBART06G20450
I
0.674
OGLUM06G21530
Oryza glumaepatula
OGLUM06G21530
I
0.674
OLONG_019401
Oryza longistaminata
OLONG_019401
I
0.674
OMERI06G21070
Oryza meridionalis
OMERI06G21070
I
0.674
ONIVA06G24230
Oryza nivara
ONIVA06G24230
I
0.674
ORGLA06G0168900
Oryza glaberrima
ORGLA06G0168900
I
0.674
ORUFI06G21880
Oryza rufipogon
ORUFI06G21880
I
0.674
Thhalv10025350m.g
Eutrema salsugineum
Thhalv10025350m.g
I
0.674
F775_08967
Aegilops tauschii
F775_08967
I
0.669
GSMUA_Achr7G00280_001
Musa acuminata
GSMUA_Achr7G00280_001
I
0.663
MLOC_6041
Hordeum vulgare
MLOC_6041
I
0.663