Pavir.Ib03827 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ib03827 T289290_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.728 0.815
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.728 0.815
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.711 0.804
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.711 0.804
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.711 0.804
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.672 0.761
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.672 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03827.1.p Myb 46 93
Pavir.Ib03827.1.p Myb 99 143

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si039629m.g Setaria italica Si039629m.g I 0.900
OB03G32840 Oryza brachyantha OB03G32840 I 0.857
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.841
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.841
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.841
OBART03G24120 Oryza barthii OBART03G24120 I 0.832
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.832
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.832
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.832
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.832
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.832
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.832
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.832
OS03G0578900 Oryza sativa OS03G0578900 I 0.832
F775_23034 Aegilops tauschii F775_23034 I 0.813
LPERR03G20110 Leersia perrieri LPERR03G20110 I 0.813
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.813
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.805
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.800
GSMUA_Achr7G00280_001 Musa acuminata GSMUA_Achr7G00280_001 I 0.770
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.768
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.752
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.750
Ca_20081 Cicer arietinum Ca_20081 I 0.750
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.748
mgf010934m Mimulus guttatus mgf010934m I 0.745
mgf019173m Mimulus guttatus mgf019173m I 0.745
MDP0000147309 Malus domestica MDP0000147309 I 0.745
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.743
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.741
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.740
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.740
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.737
F775_00954 Aegilops tauschii F775_00954 I 0.735
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.735
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.735
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.735
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.732
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.731
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.730
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.728
F775_28392 Aegilops tauschii F775_28392 I 0.728
Gam1 Hordeum vulgare Q96464_HORVU D 0.728
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.728
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.728
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.728
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.727
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.726
Bo9g119060 Brassica oleracea Bo9g119060 I 0.726
Bra002938 Brassica rapa Bra002938 I 0.726
Si006555m.g Setaria italica Si006555m.g I 0.726
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.726
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.726
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.726
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.726
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.726
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.725
Ca_25013 Cicer arietinum Ca_25013 I 0.725
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.724
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.724
Pm016605 Prunus mume Pm016605 I 0.724
MYB97 Arabidopsis thaliana AT4G26930 I 0.723
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.723
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.723
BGIOSGA020673 Oryza indica BGIOSGA020673 I 0.722
OGLUM06G26120 Oryza glumaepatula OGLUM06G26120 I 0.722
OMERI06G24960 Oryza meridionalis OMERI06G24960 I 0.722
ONIVA06G28020 Oryza nivara ONIVA06G28020 I 0.722
OPUNC06G22490 Oryza punctata OPUNC06G22490 I 0.722
ORUFI06G26670 Oryza rufipogon ORUFI06G26670 I 0.722
OS06G0679400 Oryza sativa OS06G0679400 I 0.722
Si000907m.g Setaria italica Si000907m.g I 0.719
Traes_7DS_8DF2537B8 Triticum aestivum Traes_7DS_8DF2537B8 I 0.719
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.718
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.718
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.717
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.717
MDP0000151688 Malus domestica MDP0000151688 I 0.716
MDP0000176798 Malus domestica MDP0000176798 I 0.716
mgf002965m Mimulus guttatus mgf002965m I 0.715
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.715
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.714
Pm015094 Prunus mume Pm015094 I 0.714
Bra035547 Brassica rapa Bra035547 I 0.713
MDP0000175835 Malus domestica MDP0000175835 I 0.713
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.712
MYB101 Arabidopsis thaliana AT2G32460 D 0.711
GAM1 Oryza indica BGIOSGA004670 I 0.711
Bo3g026690 Brassica oleracea Bo3g026690 I 0.711
Bo4g178040 Brassica oleracea Bo4g178040 I 0.711
Bra021791 Brassica rapa Bra021791 I 0.711
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.711
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.711
OB01G43550 Oryza brachyantha OB01G43550 I 0.711
OBART01G34660 Oryza barthii OBART01G34660 I 0.711
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.711
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.711
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.711
GAMYB Oryza sativa OS01G0812000 I 0.711
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.711
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.711
MDP0000308617 Malus domestica MDP0000308617 I 0.711
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.710
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.710
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.710
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.709
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.709
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.709
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.708
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.708
MDP0000179306 Malus domestica MDP0000179306 I 0.708
Bo3g021790 Brassica oleracea Bo3g021790 I 0.706
Bra028997 Brassica rapa Bra028997 I 0.706
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.706
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.706
Bo4g046000 Brassica oleracea Bo4g046000 I 0.705
Bra005597 Brassica rapa Bra005597 I 0.705
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.705
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.705
Cla005406 Citrullus lanatus Cla005406 I 0.705
PK15478.1 Cannabis sativa PK15478.1 I 0.705
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.704
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.704
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.704
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.703
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.703
TCM_044611 Theobroma cacao TCM_044611 I 0.703
29686.m000890 Ricinus communis 29686.m000890 I 0.703
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.703
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.703
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.703
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.703
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.703
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.703
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.703
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.703
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.703
F775_14392 Aegilops tauschii F775_14392 I 0.702
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.702
Traes_6AS_5562B97F7 Triticum aestivum Traes_6AS_5562B97F7 I 0.702
Traes_6DS_A0EC5D808 Triticum aestivum Traes_6DS_A0EC5D808 I 0.702
TRIUR3_22706 Triticum urartu TRIUR3_22706 I 0.702
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.699
LPERR06G20610 Leersia perrieri LPERR06G20610 I 0.697
Bra022888 Brassica rapa Bra022888 I 0.696
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.696
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.695
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.695
Cla013880 Citrullus lanatus Cla013880 I 0.694
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.694
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.694
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.694
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.694
TCM_011907 Theobroma cacao TCM_011907 I 0.692
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.692
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.692
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.692
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.692
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.692
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.692
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.692
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.691
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.691
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.690
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.690
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.690
TCM_041010 Theobroma cacao TCM_041010 I 0.690
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.690
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.690
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.689
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.688
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.688
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.688
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.688
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.687
29823.m000215 Ricinus communis 29823.m000215 I 0.687
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.687
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.687
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.686
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.686
Bo1g141040 Brassica oleracea Bo1g141040 I 0.684
Bra002042 Brassica rapa Bra002042 I 0.684
GRMZM2G161512 Zea mays GRMZM2G161512 N 0.684
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.684
Ca_21739 Cicer arietinum Ca_21739 I 0.684
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.683
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.682
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.682
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.682
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.681
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.681
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.681
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.681
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.681
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.680
Pavir.Ab00447 Panicum virgatum Pavir.Ab00447 I 0.680
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.679
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.679
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.678
TCM_030853 Theobroma cacao TCM_030853 I 0.678
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.678
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.675
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.675
29785.m000932 Ricinus communis 29785.m000932 I 0.673
mgf025568m Mimulus guttatus mgf025568m I 0.673
MYB33 Arabidopsis thaliana AT5G06100 D 0.672
GLYMA08G43000 Glycine max GLYMA08G43000 I 0.671
Cla007782 Citrullus lanatus Cla007782 I 0.671
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.671
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.671
mgf020500m Mimulus guttatus mgf020500m I 0.670
Bra012038 Brassica rapa Bra012038 I 0.669
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.669
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.668
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.668
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.666
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.664
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.662
Bo4g076940 Brassica oleracea Bo4g076940 I 0.661