Gorai.002G089900 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.002G089900 T287490_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.801 0.839
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.794 0.839
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.794 0.839
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.794 0.839
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.782 0.817
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.782 0.817
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.778 0.849
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.778 0.849
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.761 0.839
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.710 0.817
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.710 0.817
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.702 0.817
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.702 0.817
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.702 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G089900.1 Myb 32 79
Gorai.002G089900.1 Myb 85 130

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_030853 Theobroma cacao TCM_030853 I 0.909
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.862
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.848
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.831
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.823
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.820
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.820
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.820
TCM_011907 Theobroma cacao TCM_011907 I 0.808
29823.m000215 Ricinus communis 29823.m000215 I 0.806
Cla005406 Citrullus lanatus Cla005406 I 0.805
MDP0000308617 Malus domestica MDP0000308617 I 0.805
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.803
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.803
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.801
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.799
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.799
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.799
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.799
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.799
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.796
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.795
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.794
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.794
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.792
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I 0.789
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.788
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.788
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.787
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.786
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.784
MYB101 Arabidopsis thaliana AT2G32460 D 0.782
Bo3g026690 Brassica oleracea Bo3g026690 I 0.782
Bra021791 Brassica rapa Bra021791 I 0.782
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.782
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.782
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.782
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.782
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.781
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.781
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.781
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.781
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.781
MDP0000179306 Malus domestica MDP0000179306 I 0.781
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.780
Pm015094 Prunus mume Pm015094 I 0.780
MDP0000175835 Malus domestica MDP0000175835 I 0.780
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.779
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.778
F775_28392 Aegilops tauschii F775_28392 I 0.778
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.778
Gam1 Hordeum vulgare Q96464_HORVU D 0.778
Si000907m.g Setaria italica Si000907m.g I 0.778
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.778
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.778
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.778
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.773
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.773
mgf002965m Mimulus guttatus mgf002965m I 0.773
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.773
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.773
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.772
MDP0000151688 Malus domestica MDP0000151688 I 0.772
MDP0000176798 Malus domestica MDP0000176798 I 0.772
Bo4g178040 Brassica oleracea Bo4g178040 I 0.771
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.771
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.771
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.770
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.770
Ca_07119 Cicer arietinum Ca_07119 I 0.770
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.768
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.768
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.767
Bra022888 Brassica rapa Bra022888 I 0.767
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.767
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.767
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.767
Cla007782 Citrullus lanatus Cla007782 I 0.766
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.764
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.762
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.762
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.762
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.762
GAM1 Oryza indica BGIOSGA004670 I 0.761
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.761
OB01G43550 Oryza brachyantha OB01G43550 I 0.761
OBART01G34660 Oryza barthii OBART01G34660 I 0.761
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.761
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.761
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.761
GAMYB Oryza sativa OS01G0812000 I 0.761
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.760
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.760
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.759
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.759
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.758
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.758
TCM_041010 Theobroma cacao TCM_041010 I 0.758
Pm016605 Prunus mume Pm016605 I 0.758
MDP0000147309 Malus domestica MDP0000147309 I 0.758
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.755
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.755
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.755
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.754
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.754
mgf025568m Mimulus guttatus mgf025568m I 0.753
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.752
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.750
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.750
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.750
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.750
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.747
Pm011812 Prunus mume Pm011812 I 0.747
29785.m000932 Ricinus communis 29785.m000932 I 0.747
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.745
Ca_21739 Cicer arietinum Ca_21739 I 0.745
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.743
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.743
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.741
mgf020500m Mimulus guttatus mgf020500m I 0.741
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.741
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.741
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.741
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.741
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.741
Bra002938 Brassica rapa Bra002938 I 0.738
Bra035547 Brassica rapa Bra035547 I 0.738
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.738
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.738
TCM_044611 Theobroma cacao TCM_044611 I 0.738
29686.m000890 Ricinus communis 29686.m000890 I 0.738
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.738
mgf010934m Mimulus guttatus mgf010934m I 0.738
mgf019173m Mimulus guttatus mgf019173m I 0.738
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.738
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.738
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.738
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.738
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.738
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.737
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.735
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.735
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.735
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.734
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.733
PK17293.1 Cannabis sativa PK17293.1 I 0.733
Bo9g119060 Brassica oleracea Bo9g119060 I 0.732
Ca_25013 Cicer arietinum Ca_25013 I 0.732
Cla013880 Citrullus lanatus Cla013880 I 0.729
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.729
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.729
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.729
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.729
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.729
Bo4g046000 Brassica oleracea Bo4g046000 I 0.728
Bra005597 Brassica rapa Bra005597 I 0.728
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.728
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I 0.726
PK15478.1 Cannabis sativa PK15478.1 I 0.726
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.725
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.722
Ca_20081 Cicer arietinum Ca_20081 I 0.721
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I 0.721
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.719
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.718
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.718
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.716
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.716
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.714
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.714
MYB97 Arabidopsis thaliana AT4G26930 I 0.712
Bo3g021790 Brassica oleracea Bo3g021790 I 0.712
Bra028997 Brassica rapa Bra028997 I 0.712
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.712
Bo5g136570 Brassica oleracea Bo5g136570 I 0.711
Bra034842 Brassica rapa Bra034842 I 0.711
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.711
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.711
MYB33 Arabidopsis thaliana AT5G06100 D 0.710
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.710
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.708
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.708
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.707
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.702
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.702
GRMZM2G028054 Zea mays GRMZM2G028054 I 0.702
OBART03G24120 Oryza barthii OBART03G24120 I 0.702
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.702
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.702
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.702
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.702
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.702
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.702
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.702
OS03G0578900 Oryza sativa OS03G0578900 I 0.702
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.702
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.702
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.702
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.700
OBART05G21120 Oryza barthii OBART05G21120 I 0.700
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.700
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.700
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.700
OS05G0490600 Oryza sativa OS05G0490600 I 0.700
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.699
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.696
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.695
F775_00954 Aegilops tauschii F775_00954 I 0.695
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.695
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.695
Traes_7AL_0AD4A7A87 Triticum aestivum Traes_7AL_0AD4A7A87 I 0.695
Traes_7DL_FAF2AE9FB Triticum aestivum Traes_7DL_FAF2AE9FB I 0.695
TRIUR3_17146 Triticum urartu TRIUR3_17146 I 0.695
F775_23034 Aegilops tauschii F775_23034 I 0.693
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.693
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.688
OBART06G20450 Oryza barthii OBART06G20450 I 0.687
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.687
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.687
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.687
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.687
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.687
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.687
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.687
Ca_15422 Cicer arietinum Ca_15422 I 0.687
GLYMA20G11040 Glycine max GLYMA20G11040 I 0.685
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.685
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.685
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.680
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.679
Si006555m.g Setaria italica Si006555m.g I 0.679
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.679
Bo4g076940 Brassica oleracea Bo4g076940 I 0.678
OB03G32840 Oryza brachyantha OB03G32840 I 0.678
Si039629m.g Setaria italica Si039629m.g I 0.678
Pavir.Ib03827 Panicum virgatum Pavir.Ib03827 I 0.678
Bra012038 Brassica rapa Bra012038 I 0.675
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.675
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.675
Bo1g141040 Brassica oleracea Bo1g141040 I 0.672
Bra002042 Brassica rapa Bra002042 I 0.672
Eucgr.K03562 Eucalyptus grandis Eucgr.K03562 I 0.672
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.668
F775_08967 Aegilops tauschii F775_08967 I 0.667
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.667
Si007070m.g Setaria italica Si007070m.g I 0.667
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.667
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I 0.667
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.665
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.663
Bo7g033260 Brassica oleracea Bo7g033260 I 0.663
Bra015029 Brassica rapa Bra015029 I 0.663
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.663