Pavir.Da00534 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Da00534 T289082_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.696 0.742
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.684 0.731
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.684 0.731
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.684 0.731
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.679 0.731
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.679 0.731
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.677 0.699
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.674 0.710
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.674 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00534.1.p Myb 66 113
Pavir.Da00534.1.p Myb 119 164
Pavir.Da00534.2.p Myb 66 113
Pavir.Da00534.2.p Myb 119 164

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb10g023665 Sorghum bicolor Sb10g023665 I 0.909
Si007070m.g Setaria italica Si007070m.g I 0.909
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.783
OBART06G20450 Oryza barthii OBART06G20450 I 0.779
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.779
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.779
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.779
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.779
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.779
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.779
F775_08967 Aegilops tauschii F775_08967 I 0.762
TRIUR3_15006 Triticum urartu TRIUR3_15006 I 0.762
LPERR06G17110 Leersia perrieri LPERR06G17110 N 0.745
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.712
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.705
mgf020500m Mimulus guttatus mgf020500m I 0.698
GAM1 Oryza indica BGIOSGA004670 I 0.696
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.696
OB01G43550 Oryza brachyantha OB01G43550 I 0.696
OBART01G34660 Oryza barthii OBART01G34660 I 0.696
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.696
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.696
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.696
GAMYB Oryza sativa OS01G0812000 I 0.696
GRMZM2G167088 Zea mays GRMZM2G167088 N 0.694
GRMZM2G416652 Zea mays GRMZM2G416652 N 0.694
Ca_25013 Cicer arietinum Ca_25013 I 0.693
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.691
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.688
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.687
Cla013880 Citrullus lanatus Cla013880 I 0.687
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.687
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.685
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.685
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.685
Ca_07119 Cicer arietinum Ca_07119 I 0.685
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.684
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.684
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.684
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.684
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.684
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.684
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.684
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.684
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.684
Pavir.J25517 Panicum virgatum Pavir.J25517 N 0.683
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.682
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.682
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.681
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.681
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.681
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.681
MDP0000179306 Malus domestica MDP0000179306 I 0.681
MDP0000308617 Malus domestica MDP0000308617 I 0.681
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.680
Bo9g119060 Brassica oleracea Bo9g119060 I 0.680
Bra002938 Brassica rapa Bra002938 I 0.680
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.680
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.680
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.680
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.680
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.680
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.680
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.679
F775_28392 Aegilops tauschii F775_28392 I 0.679
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.679
Gam1 Hordeum vulgare Q96464_HORVU D 0.679
Si006555m.g Setaria italica Si006555m.g I 0.679
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.679
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.679
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I 0.679
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.679
GRMZM2G004090 Zea mays GRMZM2G004090 N 0.678
29785.m000932 Ricinus communis 29785.m000932 I 0.678
mgf025568m Mimulus guttatus mgf025568m I 0.678
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.677
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.677
Ca_20081 Cicer arietinum Ca_20081 I 0.677
Cla005406 Citrullus lanatus Cla005406 I 0.677
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.677
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.677
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.677
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.676
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.676
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.675
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.675
MYB101 Arabidopsis thaliana AT2G32460 D 0.674
Bo3g026690 Brassica oleracea Bo3g026690 I 0.674
Bo4g046000 Brassica oleracea Bo4g046000 I 0.674
Bra005597 Brassica rapa Bra005597 I 0.674
Bra021791 Brassica rapa Bra021791 I 0.674
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.674
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.674
Pm015094 Prunus mume Pm015094 I 0.674
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.674
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.674
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.674
MDP0000151688 Malus domestica MDP0000151688 I 0.674
MDP0000175835 Malus domestica MDP0000175835 I 0.674
MDP0000176798 Malus domestica MDP0000176798 I 0.674
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.674
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.674
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.674
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.673
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.673
29823.m000215 Ricinus communis 29823.m000215 I 0.672
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.672
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.671
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.671
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.671
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.670
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.670
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.670
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.670
Sb10g027280 Sorghum bicolor Sb10g027280 I 0.670
Si000907m.g Setaria italica Si000907m.g I 0.670
TCM_011907 Theobroma cacao TCM_011907 I 0.670
TCM_041010 Theobroma cacao TCM_041010 I 0.670
TCM_044611 Theobroma cacao TCM_044611 I 0.670
29686.m000890 Ricinus communis 29686.m000890 I 0.670
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.670
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.670
mgf010934m Mimulus guttatus mgf010934m I 0.670
mgf019173m Mimulus guttatus mgf019173m I 0.670
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.670
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.670
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.670
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.670
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.670
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.670
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.670
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.670
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.670
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.670
PK15478.1 Cannabis sativa PK15478.1 I 0.670
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.670
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.669
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.668
Ca_21739 Cicer arietinum Ca_21739 I 0.668
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I 0.668
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.667
Bra035547 Brassica rapa Bra035547 I 0.667
GRMZM2G093789 Zea mays GRMZM2G093789 N 0.667
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.667
TCM_030853 Theobroma cacao TCM_030853 I 0.667
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.667
Pm016605 Prunus mume Pm016605 I 0.667
mgf002965m Mimulus guttatus mgf002965m I 0.667
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.667
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.667
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.667
MDP0000147309 Malus domestica MDP0000147309 I 0.667
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.667
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.666
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.665
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.665
Bo4g178040 Brassica oleracea Bo4g178040 I 0.664
BRADI1G32720 Brachypodium distachyon BRADI1G32720 I 0.664
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.664
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I 0.664
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.663
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.662
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.662
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.662
chr4.LjT12N18.150.nd Lotus japonicus chr4.LjT12N18.150.nd I 0.662
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.661
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.661
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.661
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.661
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.661
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.661
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.661
Cla007782 Citrullus lanatus Cla007782 I 0.661
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.661
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.661
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.661
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.661
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.661