ENSGMOG00000017053 (Gadus morhua)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSGMOG00000017053 T311666_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.912 0.912
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.912 0.912
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.912 0.912
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.912 0.912
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.896 0.896
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.896 0.896
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.896 0.896
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.880 0.880
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.864 0.864
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.864 0.864
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.864 0.864
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.744 0.744
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.744 0.744
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.744 0.744
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.744 0.744
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.744 0.744
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.744 0.744
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.744 0.744
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.744 0.744
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.744 0.744
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.744 0.744
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.744 0.744
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.744 0.744
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.744 0.744
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.744 0.744
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.744 0.744
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.744 0.744
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.744 0.744
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.744 0.744
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.736 0.736
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.728 0.728
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.728 0.728
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.728 0.728
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.728 0.728
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.728 0.728
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.720 0.720
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.712 0.712
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.712 0.712
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.712 0.712
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.712 0.712
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000018321 Paired box 3 127

Links

Other Paired box family TFs
Other Gadus morhua TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012729 Calypte anna Aan_R012729 I
Afo_R015662 Aptenodytes forsteri Afo_R015662 I
Alligator_sinensis_CCG005309.1 Alligator sinensis Alligator_sinensis_CCG005309.1 I
Brh_R011794 Buceros rhinoceros Brh_R011794 I
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I
ENSAMXG00000003341 Astyanax mexicanus ENSAMXG00000003341 I
ENSAPLG00000013878 Anas platyrhynchos ENSAPLG00000013878 I
NFKB1 Bos taurus ENSBTAG00000020270 I
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I
NFKB1 Canis familiaris ENSCAFG00000010730 I
NFKB1 Callithrix jacchus ENSCJAG00000015382 I
NFKB1 Cavia porcellus ENSCPOG00000007789 I
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I
nfkb1 Danio rerio ENSDARG00000105261 I
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I
Nfkb1 Dipodomys ordii ENSDORG00000007447 I
NFKB1 Equus caballus ENSECAG00000015042 I
ENSFALG00000008136 Ficedula albicollis ENSFALG00000008136 I
NFKB1 Felis catus ENSFCAG00000007557 I
NFKB1 Homo sapiens ENSG00000109320 D
NFKB1 Gallus gallus ENSGALG00000012304 I
NFKB1 Gorilla gorilla ENSGGOG00000009071 I
ENSGMOG00000007506 Gadus morhua ENSGMOG00000007506 N
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I
NFKB1 Loxodonta africana ENSLAFG00000009344 I
ENSLOCG00000012080 Lepisosteus oculatus ENSLOCG00000012080 I
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I
NFKB1 Myotis lucifugus ENSMLUG00000005986 I
NFKB1 Macaca mulatta ENSMMUG00000003736 I
NFKB1 Monodelphis domestica ENSMODG00000020672 I
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I
Nfkb1 Mus musculus ENSMUSG00000028163 D
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I
NFKB1 Otolemur garnettii ENSOGAG00000012840 I
ENSONIG00000004349 Oreochromis niloticus ENSONIG00000004349 I
NFKB1 Ochotona princeps ENSOPRG00000005212 I
ENSP00000226574 Macaca fascicularis ENSP00000226574 I
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I
NFKB1 Procavia capensis ENSPCAG00000008172 I
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I
ENSPSIG00000008515 Pelodiscus sinensis ENSPSIG00000008515 I
NFKB1 Pan troglodytes ENSPTRG00000016320 I
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I
NFKB1 Sus scrofa ENSSSCG00000030957 I
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I
NFKB1 Tupaia belangeri ENSTBEG00000003520 I
NFKB1 Taeniopygia guttata ENSTGUG00000003595 I
NFKB1 Tursiops truncatus ENSTTRG00000010852 I
NFKB1 Vicugna pacos ENSVPAG00000000280 I
Gfo_R000994 Geospiza fortis Gfo_R000994 I
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I
Ogr10707 Ophisaurus gracilis Ogr10707 I
Tal_R004861 Tyto alba Tal_R004861 I
nfkb1 Xenopus tropicalis XB-GENE-985746 I
nfkb1.L Xenopus laevis XB-GENE-985749 I