CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
GK14101
(
Drosophila willistoni
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00292 (PAX)
IPR001523
FBgn0216107
T311899_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
1.000
1.000
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
1.000
1.000
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
1.000
1.000
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.880
0.880
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.880
0.880
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.880
0.880
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.880
0.880
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.880
0.880
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.880
0.880
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.880
0.880
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.872
0.872
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.752
0.752
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.744
0.744
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.736
0.736
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.736
0.736
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.736
0.736
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.736
0.736
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.736
0.736
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.736
0.736
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.736
0.736
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.736
0.736
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.736
0.736
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.736
0.736
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.736
0.736
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.736
0.736
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.736
0.736
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.736
0.736
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.736
0.736
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.736
0.736
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.736
0.736
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.736
0.736
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN
NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.728
0.728
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN
NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.720
0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.712
0.712
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.712
0.712
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.712
0.712
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.712
0.712
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.712
0.712
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.712
0.712
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.712
0.712
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0243244
Paired box
14
138
QYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRILR
Links
Other
Paired box
family TFs
Other
Drosophila willistoni
TFs
488 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30006.m000282
Ricinus communis
30006.m000282
N
0.000
30170.m013669
Ricinus communis
30170.m013669
N
0.000
AMTR_s00159p00062070
Amborella trichopoda
AMTR_s00159p00062070
N
0.000
Aquca_009_00241
Aquilegia coerulea
Aquca_009_00241
N
0.000
AT2G41710
Arabidopsis thaliana
AT2G41710
N
0.000
BGIOSGA019793
Oryza indica
BGIOSGA019793
N
0.000
BGIOSGA023402
Oryza indica
BGIOSGA023402
N
0.000
Bo3g035770
Brassica oleracea
Bo3g035770
N
0.000
Bo4g013420
Brassica oleracea
Bo4g013420
N
0.000
Bra004641
Brassica rapa
Bra004641
N
0.000
BRADI2G26987
Brachypodium distachyon
BRADI2G26987
N
0.000
Cagra.0914s0005
Capsella grandiflora
Cagra.0914s0005
N
0.000
Carubv10023272m.g
Capsella rubella
Carubv10023272m.g
N
0.000
cassava19560.m1
Manihot esculenta
cassava19560.m1
N
0.000
cassava40681.m1
Manihot esculenta
cassava40681.m1
N
0.000
cassava421.valid.m1
Manihot esculenta
cassava421.valid.m1
N
0.000
Ca_07237
Cicer arietinum
Ca_07237
N
0.000
chr3.CM0452.130.nd
Lotus japonicus
chr3.CM0452.130.nd
N
0.000
Ciclev10005012m.g
Citrus clementina
Ciclev10005012m.g
N
0.000
Cla022214
Citrullus lanatus
Cla022214
N
0.000
Cucsa.338170
Cucumis sativus
Cucsa.338170
N
0.000
Cucsa.353040
Cucumis sativus
Cucsa.353040
I
0.000
Eucgr.A02341
Eucalyptus grandis
Eucgr.A02341
N
0.000
evm.TU.supercontig_129.70
Carica papaya
evm.TU.supercontig_129.70
N
0.000
evm.TU.supercontig_224.4
Carica papaya
evm.TU.supercontig_224.4
N
0.000
evm.TU.supercontig_99.39
Carica papaya
evm.TU.supercontig_99.39
N
0.000
F775_10869
Aegilops tauschii
F775_10869
N
0.000
fgenesh2_kg.4__2311__AT2G41710.2
Arabidopsis lyrata
fgenesh2_kg.4__2311__AT2G41710.2
N
0.000
gene02470-v1.0-hybrid
Fragaria vesca
gene02470-v1.0-hybrid
N
0.000
GLYMA02G33090
Glycine max
GLYMA02G33090
N
0.000
GLYMA03G29240
Glycine max
GLYMA03G29240
N
0.000
GLYMA19G31960
Glycine max
GLYMA19G31960
N
0.000
Gorai.003G091500
Gossypium raimondii
Gorai.003G091500
N
0.000
GRMZM2G013657
Zea mays
GRMZM2G013657
N
0.000
GRMZM2G146688
Zea mays
GRMZM2G146688
N
0.000
LjSGA_012098.1
Lotus japonicus
LjSGA_012098.1
N
0.000
LPERR05G11930
Leersia perrieri
LPERR05G11930
N
0.000
Lus10000965.g
Linum usitatissimum
Lus10000965.g
N
0.000
Lus10011730.g
Linum usitatissimum
Lus10011730.g
N
0.000
Lus10039650.g
Linum usitatissimum
Lus10039650.g
N
0.000
Lus10040140.g
Linum usitatissimum
Lus10040140.g
N
0.000
MDP0000314518
Malus domestica
MDP0000314518
N
0.000
MDP0000803527
Malus domestica
MDP0000803527
N
0.000
mgf017600m
Mimulus guttatus
mgf017600m
N
0.000
mgf019897m
Mimulus guttatus
mgf019897m
N
0.000
MLOC_7325
Hordeum vulgare
MLOC_7325
N
0.000
MTR_7g091390
Medicago truncatula
MTR_7g091390
N
0.000
OB03G42600
Oryza brachyantha
OB03G42600
N
0.000
OB05G22940
Oryza brachyantha
OB05G22940
N
0.000
OB06G31060
Oryza brachyantha
OB06G31060
N
0.000
OBART05G15060
Oryza barthii
OBART05G15060
N
0.000
OBART06G23380
Oryza barthii
OBART06G23380
N
0.000
OGLUM05G15890
Oryza glumaepatula
OGLUM05G15890
N
0.000
OGLUM06G03000
Oryza glumaepatula
OGLUM06G03000
N
0.000
OLONG_002212
Oryza longistaminata
OLONG_002212
N
0.000
OLONG_020459
Oryza longistaminata
OLONG_020459
N
0.000
OMERI05G13370
Oryza meridionalis
OMERI05G13370
N
0.000
OMERI06G23370
Oryza meridionalis
OMERI06G23370
N
0.000
ONIVA05G15390
Oryza nivara
ONIVA05G15390
N
0.000
OPUNC05G13110
Oryza punctata
OPUNC05G13110
N
0.000
orange1.1g018292m.g
Citrus sinensis
orange1.1g018292m.g
N
0.000
ORGLA05G0129100
Oryza glaberrima
ORGLA05G0129100
N
0.000
ORUFI05G16140
Oryza rufipogon
ORUFI05G16140
N
0.000
Pavir.Ca01410
Panicum virgatum
Pavir.Ca01410
N
0.000
Pavir.Cb01456
Panicum virgatum
Pavir.Cb01456
N
0.000
PDK_20s1313371g002
Phoenix dactylifera
PDK_20s1313371g002
N
0.000
PK12273.1
Cannabis sativa
PK12273.1
N
0.000
PK15670.1
Cannabis sativa
PK15670.1
N
0.000
PK18855.1
Cannabis sativa
PK18855.1
N
0.000
POPTR_0006s04820
Populus trichocarpa
POPTR_0006s04820
N
0.000
POPTR_0016s05670
Populus trichocarpa
POPTR_0016s05670
N
0.000
PRUPE_ppa006202mg
Prunus persica
PRUPE_ppa006202mg
N
0.000
SapurV1A.0037s0030
Salix purpurea
SapurV1A.0037s0030
N
0.000
SapurV1A.3066s0020
Salix purpurea
SapurV1A.3066s0020
N
0.000
Sb09g019190
Sorghum bicolor
Sb09g019190
N
0.000
Si021952m.g
Setaria italica
Si021952m.g
N
0.000
Solyc02g030210.2
Solanum lycopersicum
Solyc02g030210.2
N
0.000
TCM_024554
Theobroma cacao
TCM_024554
N
0.000
Thhalv10016812m.g
Eutrema salsugineum
Thhalv10016812m.g
N
0.000
Traes_6AS_53FA034C9
Triticum aestivum
Traes_6AS_53FA034C9
N
0.000
TRIUR3_07433
Triticum urartu
TRIUR3_07433
N
0.000
BBM
Vitis vinifera
VIT_04s0023g00950
N
0.000
VIT_08s0007g08580
Vitis vinifera
VIT_08s0007g08580
N
0.000